GenTaR REST API

POST /auth/signin HTTP/1.1
Content-Type: application/json
Content-Length: 85
Host: localhost:8080

{
  "userName" : "gentar_test_user1@gentar.org",
  "password" : "gentar_test_user1"
}

HTTP/1.1 200 OK
Content-Type: application/json
Content-Length: 806

{
  "userName" : "gentar_test_user1@gentar.org",
  "accessToken" : "eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6Iks3X0E1RXczWVlMT2Iyc3B1THZYU2ciLCJpYXQiOjE3MDg0NDE2NzUsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ3NX0.JBHLdRS88btTIkJ2knqjqXegOxBRuXjMHX2wo2X3ZuZhpTd0uaJ4cs31msI7aDnDCZNzkLO6glb-usoxUp3JD32F7lHn9ud9kINPSav6SUxh2UYRP-pOI3U91iAZm2RElD1XnqH6FRWkbWgE5HVOZD4pa0w_q9opmcGX6qs9b9qVbLB6Yq7SCMhA0HrvfEu7NeJdoRzLuw060OxLEVPlOpts_1ho6HMu-bLLzCHJBzE07MJjn6dCEWUVv13FZdJeuKsezLdwa7SONWSN7Bm9OZeA9muo6GJHd59Wsjy4yD-OJRo0ZdWkivhzgkDnll7FWEL4L6Mm2Nsz_OB-_gV2YQ"
}

$ curl 'http://localhost:8080/api/people/currentPerson' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IlJ1RnQtRVFtRFRwLTdoeVgxSVBvVkEiLCJpYXQiOjE3MDg0NDE2MDQsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQwNH0.S-9HpAtwyJDabsvduCTGjkfKNhWqUQusSVEaDMxpRDtnbJaTVsJWFa8_L6HZn01BmyS85FHHSKXbOzioqIDN1N2J1kVta5ASB1waQLxErKrd3mWMQzp_LHaJP7IQ-BCBlfn9-xxO77jU9zusoHz8owydS7gtOok2ki_BIlYXr5Xn4vbsVtnBvX3uZ0_MHuE3jXvuafIM4JsSqZdiPI6aT8k-jWawvQHrJUxuTcpJSZkDuyRMiYFeaIMkCCXd0ubtjVsCXixmINs1y-ViJ3c7m22VagNyAQfHh2xPdhm8X8qkFMvmvWpNCsGrNvwrgcOFLXk0inUgh6JXyqnJ0LV2Bg'

HTTP/1.1 200 OK
Content-Type: application/json
Content-Length: 551

{
  "name" : "Test user name",
  "email" : "gentar_test_user1@gentar.org",
  "contactable" : true,
  "rolesWorkUnits" : [ {
    "id" : 1,
    "workUnitName" : "UCD",
    "roleName" : "general"
  } ],
  "rolesConsortia" : [ {
    "id" : 1,
    "consortiumName" : "BaSH",
    "roleName" : "general"
  } ],
  "actionPermissions" : [ {
    "actionName" : "manageUsers",
    "value" : false
  }, {
    "actionName" : "executeManagerTasks",
    "value" : false
  }, {
    "actionName" : "canManageGeneLists",
    "value" : false
  } ],
  "isAdmin" : false
}

$ curl 'http://localhost:8080/api/people' -i -X POST \
    -H 'Content-Type: application/json' \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IjVVQzQwalYweFMwRU9BTHpVLWZIZ3ciLCJpYXQiOjE3MDg0NDE2MDEsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQwMX0.CeF7sSQR2C0TmKtmBse_HFZq9TCaP1CDwxncPzmPLPLN_IYozdrUIAM2O3E24h5CFTbVl_jg1xsOLg_6lLnwj_7rSP6Rq5vZp_GVMomgEPiSHXt0q2ogN4c7mb_99Uk4JKLaxStHYZHVGI4O7SZV_UWcsy6Is7oZM290AOFkzM2Kx-je1SIVeJyfDV52zndpXrov-nKifuFi4OPelaEk9JpQxVGmgPWSWa2Jz47fNssCZ7ty0yssmYHw8oPG-iuJ6txGAqyWk9_ljeRm3X_2lsIlWSdDWbIpx6pXR7ioiW9sO9QorpX7qRsKDQ9P4F8osfhrdABq0HNyWGOqQbvEbA' \
    -d '{
  "name" : "New User",
  "email" : "newuser@ebi.ac.uk",
  "password" : "newuser",
  "contactable" : true,
  "rolesWorkUnits" : [ {
    "workUnitName" : "UCD",
    "roleName" : "general"
  } ],
  "rolesConsortia" : [ {
    "consortiumName" : "CMG",
    "roleName" : "general"
  } ]
}'

HTTP/1.1 200 OK
Content-Type: application/json
Content-Length: 533

{
  "name" : "New User",
  "email" : "newuser@ebi.ac.uk",
  "contactable" : true,
  "rolesWorkUnits" : [ {
    "id" : 4,
    "workUnitName" : "UCD",
    "roleName" : "general"
  } ],
  "rolesConsortia" : [ {
    "id" : 3,
    "consortiumName" : "CMG",
    "roleName" : "general"
  } ],
  "actionPermissions" : [ {
    "actionName" : "manageUsers",
    "value" : false
  }, {
    "actionName" : "executeManagerTasks",
    "value" : false
  }, {
    "actionName" : "canManageGeneLists",
    "value" : false
  } ],
  "isAdmin" : false
}

$ curl 'http://localhost:8080/api/people/requestPasswordReset' -i -X POST \
    -H 'Content-Type: application/json' \
    -d 'gentar_test_user1@gentar.org'

HTTP/1.1 200 OK

$ curl 'http://localhost:8080/api/people/gentar_test_user2@gentar.org' -i -X PUT \
    -H 'Content-Type: application/json' \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6ImgwY0pDaGxqX01VVUxaakk4TWZxY2ciLCJpYXQiOjE3MDg0NDE2MDQsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQwNH0.i-KBRvJi4G9-R4EY4joXVozd0CuQazcWHlDY__BW7HHp2kXd-lFIBnE1R-HRQy9QJqVzOOGHcgKhi227q1UFWWBOLGoMtxhVegvta3Lhw9HEyuUnJDfIPy9Amu3FAzD6evKGNds9hq6UOA2XG716iMP8qI6lTohbEZFyEn3fmFZU6AgSqdGcexsLXU1X9_RiALOYsIfho6fMAQ3OyPkHqFFNUZuNbsyvmG3ZHzHC4VyhvT_8rrv0FqnaqLjVkWQqgzD4kEvyP18LF2eY492Cdn9nsWaEQ8BeUSM6BsxJKdTebllFd3kmzQkLX2bgGHlg4o7TQvIyKnA35U-FZTZGCA' \
    -d '{
  "name" : "Test user 2 name [edited]",
  "contactable" : false,
  "rolesWorkUnits" : [ {
    "id" : 2,
    "workUnitName" : "UCD",
    "roleName" : "general"
  } ],
  "rolesConsortia" : [ {
    "consortiumName" : "CMG",
    "roleName" : "general"
  } ]
}'

HTTP/1.1 200 OK
Content-Disposition: inline;filename=f.txt
Content-Type: application/json
Content-Length: 562

{
  "name" : "Test user 2 name [edited]",
  "email" : "gentar_test_user2@gentar.org",
  "contactable" : false,
  "rolesWorkUnits" : [ {
    "id" : 2,
    "workUnitName" : "UCD",
    "roleName" : "general"
  } ],
  "rolesConsortia" : [ {
    "id" : 4,
    "consortiumName" : "CMG",
    "roleName" : "general"
  } ],
  "actionPermissions" : [ {
    "actionName" : "manageUsers",
    "value" : false
  }, {
    "actionName" : "executeManagerTasks",
    "value" : false
  }, {
    "actionName" : "canManageGeneLists",
    "value" : false
  } ],
  "isAdmin" : false
}

$ curl 'http://localhost:8080/api/people' -i -X PUT \
    -H 'Content-Type: application/json' \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6InhtOWdWcXpCQVFUUXBfNDVnWDVCelEiLCJpYXQiOjE3MDg0NDE2MDMsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQwM30.HkQHDQoOIRLg9rxfYRJkgve1LNGoFwemeg1-ZwSWleJuO9JyJzSeX5I2AZ1fartBshMCFb2AgQh2xZcr_DyUTw9M_w4Hx5WEVN9sRv6pt_5sQ316mshKr3RKLD0QtU83enca5bfXMZI5EM_Zcq86ObnWcEwdXMfZ-cHx7DdZHycjQ-QochFaHNzw3DVAbMD1OKrr9xSkc1844vmdmYkXFrp1RN3rLK-CA-1YzUsisOeOUxcthJU5h3aHZJyKkuKwfC9W9r2Y2AB8KzX8_YfNNP7dmwRO8GD63B_xbMkAcEciYpOqTrSYmWA_5y5uYn-1a7aPNoxfaiqdeJHNOcx5Uw' \
    -d '{
  "name" : "Test user 1 name [edited]",
  "contactable" : true,
  "currentPassword" : "gentar_test_user1",
  "newPassword" : "gentar_test_user1_new"
}'

HTTP/1.1 200 OK
Content-Type: application/json
Content-Length: 558

{
  "name" : "Test user 1 name [edited]",
  "email" : "gentar_test_user1@gentar.org",
  "contactable" : true,
  "rolesWorkUnits" : [ {
    "id" : 1,
    "workUnitName" : "UCD",
    "roleName" : "general"
  } ],
  "rolesConsortia" : [ {
    "id" : 1,
    "consortiumName" : "BaSH",
    "roleName" : "general"
  } ],
  "actionPermissions" : [ {
    "actionName" : "manageUsers",
    "value" : true
  }, {
    "actionName" : "executeManagerTasks",
    "value" : true
  }, {
    "actionName" : "canManageGeneLists",
    "value" : true
  } ],
  "isAdmin" : true
}

$ curl 'http://localhost:8080/api/projects/TPN:000000001' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6Ik9NVTBuV3I0SnFEMjZvM1h0NWcxanciLCJpYXQiOjE3MDg0NDE2NzQsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ3NH0.MucimWaEsT_7PwKNkbsvN0Q3w1fENzxt3Lbv_zA7ZPaW46XXSfKfgQNGYq_7KJ6NsW5cnB3hi816T0-KSTULvP3vzgqWTn8xtHojYv8wZMSR5LxgB2q5X1anckfKtXgJtgOS0CTErySqhtynit9fsjve590UhjFAV9TLYfDEF_vQiOFrMKAJh8X98cuTGnfsYHcsKUuwX0pCWVTgJGSmatDI-ypE4ZaMVOfsHfL8u06O0yJ3py84Mveb6KfzX_oxZ0Ng31MgYiTUJpAV_7Dz6z2VwkcIYLk-PZmxItCbDlDYKBqh7jIwD871eqStVIqdYvlHWOhSQ-dELxGHAl5wXA'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 2812

{
  "tpn" : "TPN:000000001",
  "recovery" : false,
  "esCellQcOnly" : false,
  "comment" : "Comment test",
  "reactivationDate" : "2020-09-24T00:00:02",
  "privacyName" : "public",
  "assignmentStatusName" : "Assigned",
  "summaryStatusName" : "Plan Created",
  "relatedWorkUnitNames" : [ "BCM" ],
  "relatedWorkGroupNames" : [ "BaSH" ],
  "completionNote" : null,
  "completionComment" : null,
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/projects/TPN:000000001"
    },
    "productionPlans" : [ {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001"
    } ],
    "phenotypingPlans" : [ {
      "href" : "http://localhost:8080/api/plans/PIN:0000000002"
    } ]
  },
  "imitsMiPlanId" : 27136,
  "assignmentStatusStamps" : [ ],
  "projectIntentions" : [ {
    "molecularMutationTypeName" : "Point Mutation",
    "mutationCategorizations" : [ {
      "name" : "Null Reporter",
      "description" : null,
      "typeName" : "allele_category"
    } ],
    "intentionByGene" : {
      "bestOrthologs" : [ {
        "symbol" : "SERPINB10",
        "category" : "GOOD",
        "support" : null,
        "supportCount" : 9,
        "link" : "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/SERPINB10"
      } ],
      "allOrthologs" : [ {
        "symbol" : "SERPINB10",
        "category" : "GOOD",
        "support" : null,
        "supportCount" : 9,
        "link" : "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/SERPINB10"
      } ],
      "gene" : {
        "id" : 1,
        "symbol" : "Serpinb10",
        "speciesName" : "Mus musculus",
        "accessionId" : "MGI:2138648",
        "name" : "serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10",
        "externalLink" : "http://www.mousephenotype.org/data/genes/MGI:2138648"
      }
    },
    "intentionsBySequences" : [ {
      "index" : 1,
      "sequence" : {
        "id" : 1,
        "sequence" : ">Otog TGGGACTAGGTCACAGACAGAAAAAGGGGGATGAGAAGGCCTTAGATCTAAGGGAGGTAAAGAGAGAATTAACCACAGGAATTAGCACACTGAAGGATCGTGCTCGCCAGACCTCAAACCATCTCCTTCTTGCGTCATGAGAAAGCCTTGACCCATCATTTTCCAGTTTTCTGTGTTCTTGCCCCACTTTGGCCCCTGGATCCTGGGATCTCCCCAGAAATTCTTACCTAGCCCC",
        "typeName" : "complete",
        "categoryName" : "outcome sequence",
        "sequenceLocations" : [ {
          "id" : 1,
          "locationIndex" : 1,
          "location" : {
            "id" : 1,
            "chr" : "X",
            "start" : 1234567,
            "stop" : 7654321,
            "strand" : "+",
            "genomeBuild" : "GRCm38",
            "strainName" : "C57BL/6N",
            "speciesName" : "Mus musculus"
          }
        } ]
      }
    } ]
  } ],
  "consortia" : [ {
    "id" : 1,
    "consortiumName" : "CMG"
  } ],
  "colonyNames" : [ ],
  "phenotypingExternalRefs" : [ ]
}

$ curl 'http://localhost:8080/api/projects' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6ImpCcjRadk9rTm42aV94SXZJYVcwX0EiLCJpYXQiOjE3MDg0NDE2NzUsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ3NX0.CmADcXILRvn_poNOLDoFaA7cC_2h2Kns95If1AopsmOjMgr7ACj7qylBzjyy9p-2YzyTNU_JPCu44pHHnZqCT3H96YjSMEf_IDQD3iLGjb94drPmwNG5hY7ZIck354Xx8yOyU9_TMcJ4pluWjm_ld2l4Vcyue0aC1HrhRil6XF7qL5WYdmaoiZmw-usAYjdEuztrVpyFgX_k20v-o47qLAem3r6uh1tmF9rgKwzS-b2ky9uy2kclKQy1dg-W9mVGsJaI5U-McQeADOu-1UtLmm5dLfYfjXKpcS7awX8zc4R2Rn800RCIJ5LeeEH_OZh1ZnCDQBdLmsF3CB3zo9kIJQ'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Link:
Content-Type: application/hal+json
Content-Length: 3399

{
  "_embedded" : {
    "projects" : [ {
      "tpn" : "TPN:000000001",
      "recovery" : false,
      "esCellQcOnly" : false,
      "comment" : "Comment test",
      "reactivationDate" : "2020-09-24T00:00:02",
      "privacyName" : "public",
      "assignmentStatusName" : "Assigned",
      "summaryStatusName" : "Plan Created",
      "relatedWorkUnitNames" : [ "BCM" ],
      "relatedWorkGroupNames" : [ "BaSH" ],
      "completionNote" : null,
      "completionComment" : null,
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/projects/TPN:000000001"
        },
        "productionPlans" : [ {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001"
        } ],
        "phenotypingPlans" : [ {
          "href" : "http://localhost:8080/api/plans/PIN:0000000002"
        } ]
      },
      "imitsMiPlanId" : 27136,
      "assignmentStatusStamps" : [ ],
      "projectIntentions" : [ {
        "molecularMutationTypeName" : "Point Mutation",
        "mutationCategorizations" : [ {
          "name" : "Null Reporter",
          "description" : null,
          "typeName" : "allele_category"
        } ],
        "intentionByGene" : {
          "bestOrthologs" : [ {
            "symbol" : "SERPINB10",
            "category" : "GOOD",
            "support" : null,
            "supportCount" : 9,
            "link" : "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/SERPINB10"
          } ],
          "allOrthologs" : [ {
            "symbol" : "SERPINB10",
            "category" : "GOOD",
            "support" : null,
            "supportCount" : 9,
            "link" : "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/SERPINB10"
          } ],
          "gene" : {
            "id" : 1,
            "symbol" : "Serpinb10",
            "speciesName" : "Mus musculus",
            "accessionId" : "MGI:2138648",
            "name" : "serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10",
            "externalLink" : "http://www.mousephenotype.org/data/genes/MGI:2138648"
          }
        },
        "intentionsBySequences" : [ {
          "index" : 1,
          "sequence" : {
            "id" : 1,
            "sequence" : ">Otog TGGGACTAGGTCACAGACAGAAAAAGGGGGATGAGAAGGCCTTAGATCTAAGGGAGGTAAAGAGAGAATTAACCACAGGAATTAGCACACTGAAGGATCGTGCTCGCCAGACCTCAAACCATCTCCTTCTTGCGTCATGAGAAAGCCTTGACCCATCATTTTCCAGTTTTCTGTGTTCTTGCCCCACTTTGGCCCCTGGATCCTGGGATCTCCCCAGAAATTCTTACCTAGCCCC",
            "typeName" : "complete",
            "categoryName" : "outcome sequence",
            "sequenceLocations" : [ {
              "id" : 1,
              "locationIndex" : 1,
              "location" : {
                "id" : 1,
                "chr" : "X",
                "start" : 1234567,
                "stop" : 7654321,
                "strand" : "+",
                "genomeBuild" : "GRCm38",
                "strainName" : "C57BL/6N",
                "speciesName" : "Mus musculus"
              }
            } ]
          }
        } ]
      } ],
      "consortia" : [ {
        "id" : 1,
        "consortiumName" : "CMG"
      } ],
      "colonyNames" : [ ],
      "phenotypingExternalRefs" : [ ]
    } ]
  },
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/projects"
    }
  },
  "page" : {
    "size" : 40,
    "totalElements" : 1,
    "totalPages" : 1,
    "number" : 0
  }
}

GET /api/projects?assignmentStatusName=Assigned HTTP/1.1
Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IlNLX2NLeHFicjNIWU54YUpmMVcwSVEiLCJpYXQiOjE3MDg0NDE2NzQsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ3NH0.HmdysdFiMTcTmmw8L2xjtzX6h364TvIw4-gF4Dzpz2K3ZKuwaLjdGXBR_Cyk-d8P_3Tesn8KLpYt9r52A8TtTb7OCmdgJIThQDkaSxBwQp7rI3R0Zh7RRPe-07RaZbR4EmP2guqgptSXpU5T_fy0eW2cjXI3iWFKWN9Qmz73YbaLsmT3VvUxptszo2vrsukxiYKODrqkQCOELL9oCe0IvmpbLUmLnpCCgOSbcJtUYurrp66e6jZ-XVDLMV33Gfx8ayRbW0ctXwTA0yngJecWhliXqH04sqMceP1zlx8TcxH6THh4rrJsfa_-LIaHrdiMZ_DnOsLzLlW40P03tAbH8g
Host: localhost:8080

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Link:
Content-Type: application/hal+json
Content-Length: 3399

{
  "_embedded" : {
    "projects" : [ {
      "tpn" : "TPN:000000001",
      "recovery" : false,
      "esCellQcOnly" : false,
      "comment" : "Comment test",
      "reactivationDate" : "2020-09-24T00:00:02",
      "privacyName" : "public",
      "assignmentStatusName" : "Assigned",
      "summaryStatusName" : "Plan Created",
      "relatedWorkUnitNames" : [ "BCM" ],
      "relatedWorkGroupNames" : [ "BaSH" ],
      "completionNote" : null,
      "completionComment" : null,
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/projects/TPN:000000001"
        },
        "productionPlans" : [ {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001"
        } ],
        "phenotypingPlans" : [ {
          "href" : "http://localhost:8080/api/plans/PIN:0000000002"
        } ]
      },
      "imitsMiPlanId" : 27136,
      "assignmentStatusStamps" : [ ],
      "projectIntentions" : [ {
        "molecularMutationTypeName" : "Point Mutation",
        "mutationCategorizations" : [ {
          "name" : "Null Reporter",
          "description" : null,
          "typeName" : "allele_category"
        } ],
        "intentionByGene" : {
          "bestOrthologs" : [ {
            "symbol" : "SERPINB10",
            "category" : "GOOD",
            "support" : null,
            "supportCount" : 9,
            "link" : "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/SERPINB10"
          } ],
          "allOrthologs" : [ {
            "symbol" : "SERPINB10",
            "category" : "GOOD",
            "support" : null,
            "supportCount" : 9,
            "link" : "https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/SERPINB10"
          } ],
          "gene" : {
            "id" : 1,
            "symbol" : "Serpinb10",
            "speciesName" : "Mus musculus",
            "accessionId" : "MGI:2138648",
            "name" : "serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10",
            "externalLink" : "http://www.mousephenotype.org/data/genes/MGI:2138648"
          }
        },
        "intentionsBySequences" : [ {
          "index" : 1,
          "sequence" : {
            "id" : 1,
            "sequence" : ">Otog TGGGACTAGGTCACAGACAGAAAAAGGGGGATGAGAAGGCCTTAGATCTAAGGGAGGTAAAGAGAGAATTAACCACAGGAATTAGCACACTGAAGGATCGTGCTCGCCAGACCTCAAACCATCTCCTTCTTGCGTCATGAGAAAGCCTTGACCCATCATTTTCCAGTTTTCTGTGTTCTTGCCCCACTTTGGCCCCTGGATCCTGGGATCTCCCCAGAAATTCTTACCTAGCCCC",
            "typeName" : "complete",
            "categoryName" : "outcome sequence",
            "sequenceLocations" : [ {
              "id" : 1,
              "locationIndex" : 1,
              "location" : {
                "id" : 1,
                "chr" : "X",
                "start" : 1234567,
                "stop" : 7654321,
                "strand" : "+",
                "genomeBuild" : "GRCm38",
                "strainName" : "C57BL/6N",
                "speciesName" : "Mus musculus"
              }
            } ]
          }
        } ]
      } ],
      "consortia" : [ {
        "id" : 1,
        "consortiumName" : "CMG"
      } ],
      "colonyNames" : [ ],
      "phenotypingExternalRefs" : [ ]
    } ]
  },
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/projects"
    }
  },
  "page" : {
    "size" : 40,
    "totalElements" : 1,
    "totalPages" : 1,
    "number" : 0
  }
}

POST /api/projects HTTP/1.1
Content-Type: application/json
Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6ImVpOTZpY0VoRzNkcHQzVE1ZRXYxeWciLCJpYXQiOjE3MDg0NDE2NzIsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ3Mn0.A__xHC21rRJ6b9YXeaOlirD8DZZKdQQRz2tmLJGugWmC03celkmNxu6H0xSEg_mPzWhu-oOr8rP1-miPc_H1sTrIOX_EprMuSDAxlMDdPP7gxIO262J-E2tNtuxyOUosVREnspa__krNU4-zIz_8YXN5yQeiQvZ4nHz_6roiUO_9Q8z-oEXbvWOmHJcPpfqMObtZ0ruzWny2JP8vm5A-afcnvPJV4MEgpkUJMGTiJPxKcqjHCUV-BjVAiSYLeRR8JXRBzFXJiJKTmu-kqKfoJFsU4ma-O26NSK1_W8pIVFnE1liUEODwXxI_bOBTucvCOdpGTggsqiILpXPOwuPSjQ
Content-Length: 1732
Host: localhost:8080

{
  "recovery" : false,
  "esCellQcOnly" : false,
  "comment" : "comment",
  "privacyName" : "public",
  "planDetails" : {
    "funderNames" : [ "KOMP" ],
    "workUnitName" : "BCM",
    "workGroupName" : "BaSH",
    "comment" : "Plan comment",
    "attemptTypeName" : "crispr",
    "typeName" : "production"
  },
  "projectIntentions" : [ {
    "molecularMutationTypeName" : "Point Mutation",
    "mutationCategorizations" : [ {
      "name" : "Null Reporter",
      "description" : null,
      "typeName" : "allele_category"
    } ],
    "intentionByGene" : {
      "gene" : {
        "id" : null,
        "name" : null,
        "symbol" : "Serpinb10",
        "speciesName" : null,
        "externalLink" : null,
        "accessionId" : "MGI:2138648"
      }
    },
    "intentionsBySequences" : [ {
      "sequence" : {
        "sequence" : ">Gpr173 Cas9 high_Gpr173_11766 \n GATGGTTTGAGAGCCTGGACTGAAGCTTGAAAGAGAAGGCTTCTGTATGGGTCCCACCCTTCCCCTGCTGCTGGCCCCCGTATGGTGATTCTGACTTTCCCCCTGCCTATGATCAGTCCCAGCAGCACCAGCTTCACATAAGCCGATGCTGATGGCAGAGACAGTGCGCCGCTCACCTCTTCGGGCTCTCCGGTGGTGTTGGCCATACTGAGGGGCAAAGGCTACCCCCAACCCTAGGGGATTGGCCAGTTCAGTATTTGATGGGCCCTGGCGGACTCCATCAGTTTTCTTGCTGAGCTACACCTGCAAATGGGAACA",
        "typeName" : "partial",
        "categoryName" : "original starting sequence",
        "sequenceLocations" : [ {
          "locationIndex" : 1,
          "location" : {
            "chr" : "X",
            "start" : 123456,
            "stop" : 654321,
            "strand" : "+",
            "genomeBuild" : "GRCm38",
            "speciesName" : "Mus musculus",
            "strainName" : "C57BL/6N"
          }
        } ]
      },
      "index" : 1
    } ]
  } ],
  "consortia" : [ {
    "consortiumName" : "CMG"
  } ]
}

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 598

{
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/projects/TPN:000000007"
    }
  },
  "history" : [ {
    "id" : 1,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:53.310519263",
    "comment" : "Project updated",
    "details" : [ {
      "field" : "summaryStatus.name",
      "oldValue" : null,
      "newValue" : "Plan Created",
      "note" : "Field changed"
    } ]
  }, {
    "id" : 2,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:53.312476714",
    "comment" : "Project created",
    "details" : [ ]
  } ]
}

PUT /api/projects/TPN:000000001 HTTP/1.1
Content-Type: application/json
Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6Ik0zbUdobDRRb0JWczRtd0huRTRfWXciLCJpYXQiOjE3MDg0NDE2NzMsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ3M30.E3IP-lLEIw5tqdXNbdppsJWCn6tcrMpSrmT94WEnc6YGM8wrmi_KHRt0hMUUmJHY7g12UZdjqC_pV9pWp3_KqPQMUBBqp2mP19vFpIG7BQfa1BzI_TBR4OAysI_BhSH1TPek7UQwQtfE51kq_qCqO9fiaTKN-PPcyNXIpE8CQd5hiVKZ8L5qvOVBEDPxDtE4jSjky0HfVEMORv3D7NkyTkkTGslrTRaz4mzG11WZyedHH0tIq5ijTq2sbDBdzCbMJc6BWGOom21kzxfkd079iW5bSyD09F7JEyUDBmfueVaS3gB9lGfPL7uOazZ9ri_lnR3O4w4nsnRVwuEqZF-yfw
Content-Length: 137
Host: localhost:8080

{
  "tpn" : "TPN:000000001",
  "recovery" : true,
  "esCellQcOnly" : true,
  "comment" : "A new comment",
  "privacyName" : "protected"
}

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 814

{
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/projects/TPN:000000001"
    }
  },
  "history" : [ {
    "id" : 1,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:53.890766039",
    "comment" : "Project updated",
    "details" : [ {
      "field" : "comment",
      "oldValue" : "Comment test",
      "newValue" : "A new comment",
      "note" : "Field changed"
    }, {
      "field" : "esCellQcOnly",
      "oldValue" : "false",
      "newValue" : "true",
      "note" : "Field changed"
    }, {
      "field" : "privacy.name",
      "oldValue" : "public",
      "newValue" : "protected",
      "note" : "Field changed"
    }, {
      "field" : "recovery",
      "oldValue" : "false",
      "newValue" : "true",
      "note" : "Field changed"
    } ]
  } ]
}

$ curl 'http://localhost:8080/api/plans/PIN:0000000001' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6InpSNnhKMlFHZEhOSjFJMUZqb2x2R2ciLCJpYXQiOjE3MDg0NDE2MzcsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQzN30.R6aSUYwZlYMYUdgJlldC3LedH3ZHswgSWFsEBErm4EC_viiYgDjPunEOrLDVXPOJns6tu8TjMie3k0gy9lSWvZF2mbzSkeGadZoxOOh_i93cfPy_3IMoHZPy8R1Pv_-0rTyxXPUZk5gQo03CTxCxoRmhP-pw53ziGeRYEMCryRt3TeNygx3sWLSTSGZ_Xwmsz5DltrHmH5xtVxYQThsKb6Tif7ZBkJkCz5i8hg1ew3hYacECQn0b3piPhKuxzQmrix2JVuKQ-xay4bqqMJaCw8RAVQJWoPJ-AgLOomMAIM_Pc2dynLacFEA6MODcx0GVIfG3TqNo3ZFdqnESbrhjdw'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 3670

{
  "pin" : "PIN:0000000001",
  "tpn" : "TPN:000000001",
  "attemptTypeName" : "crispr",
  "funderNames" : [ "KOMP" ],
  "workUnitName" : "BCM",
  "workGroupName" : "BaSH",
  "comment" : null,
  "crisprAttempt" : {
    "miDate" : "2019-02-26",
    "experimental" : false,
    "comment" : "crispr plan comment",
    "mutagenesisExternalRef" : "MF-26326",
    "imitsMiAttemptId" : 20043,
    "attemptExternalRef" : "Attempt external ref",
    "embryoTransferDay" : "Same Day",
    "totalTransferred" : 72,
    "nucleases" : [ {
      "id" : 1,
      "typeName" : "Cas9",
      "concentration" : 250.0,
      "className" : "protein"
    } ],
    "guides" : [ {
      "id" : 1,
      "sequence" : "CTTCACGTACCAAGGAGGGGTGG",
      "guideSequence" : "CTTCACGTACCAAGGAGGGG",
      "pam" : "TGG",
      "chr" : "X",
      "start" : 45334016,
      "stop" : 45334038,
      "strand" : "+",
      "genomeBuild" : "GRCm39",
      "grnaConcentration" : 300.0,
      "truncatedGuide" : true,
      "reversed" : false,
      "sangerService" : false,
      "gid" : "GID:00000000001",
      "formatName" : "sgRNA",
      "sourceName" : "commercial"
    } ],
    "mutagenesisDonors" : [ {
      "id" : 1,
      "concentration" : 5.0,
      "vectorName" : "pUC18_Ikzf2_conditional",
      "oligoSequenceFasta" : "ATAATTGGCAGCCTGATTAGAAGAATGCCCATCTTGTCTAGTGACACATTAGAACAATGAGTAATTGCTCGATGCGGATCCATAACTTCGTATAGCATACATTATACGAAGTTATTCTCTGGGATTAAGAAAAAACTAACATATGAAACAGAAGCCCAGACATCTAAAACCACAAAGA",
      "preparationTypeName" : "Circular"
    } ],
    "reagents" : [ {
      "id" : 1,
      "reagentName" : "Ligase IV",
      "reagentDescription" : "NHEJ Inhibitor",
      "concentration" : 334.0
    } ],
    "genotypePrimers" : [ {
      "id" : 1,
      "genomicStartCoordinate" : 1,
      "genomicEndCoordinate" : 200,
      "name" : "Gpr68wtR",
      "sequence" : "GTAGAGGGACAGGCAGTTGG"
    } ],
    "totalEmbryosInjected" : 72,
    "totalEmbryosSurvived" : 70,
    "embryo2Cell" : "20043",
    "assay" : {
      "id" : 1,
      "typeName" : "T7EN1",
      "numFounderPups" : 26,
      "numFounderSelectedForBreeding" : 1,
      "founderNumAssays" : 26,
      "numDeletionG0Mutants" : 1,
      "numG0WhereMutationDetected" : 1,
      "numHdrG0Mutants" : 1,
      "numHdrG0MutantsAllDonorsInserted" : 0,
      "numHdrG0MutantsSubsetDonorsInserted" : 0,
      "numHrG0Mutants" : 0,
      "numNhejG0Mutants" : 0
    },
    "strainInjectedName" : "C57BL/6NJ"
  },
  "typeName" : "production",
  "statusName" : "Founder Obtained",
  "summaryStatusName" : "Genotype Confirmed",
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001"
    },
    "project" : {
      "href" : "http://localhost:8080/api/projects/TPN:000000001"
    }
  },
  "statusDates" : [ {
    "statusName" : "Plan Created",
    "date" : "2018-01-15T00:00:00.706639"
  }, {
    "statusName" : "Attempt In Progress",
    "date" : "2018-01-16T00:00:00.706639"
  }, {
    "statusName" : "Founder Obtained",
    "date" : "2018-02-22T20:18:00.706639"
  }, {
    "statusName" : "Embryos Obtained",
    "date" : "2018-04-04T14:32:00.706639"
  } ],
  "summaryStatusDates" : [ {
    "statusName" : "Genotype Confirmed",
    "date" : "2019-08-06T20:09:51.706639"
  } ],
  "statusTransition" : {
    "currentStatus" : "Founder Obtained",
    "transitions" : [ {
      "action" : "abortWhenFounderObtained",
      "description" : "Abort the plan after a founder obtained",
      "triggeredByUser" : true,
      "available" : false,
      "note" : "The plan has colonies that are not aborted. Please abort them first",
      "nextStatus" : "Attempt Aborted"
    } ],
    "actionToExecute" : null
  }
}

$ curl 'http://localhost:8080/api/plans' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6ImNwUFVKUXp3WTlFZWpUaHJkcmE2cnciLCJpYXQiOjE3MDg0NDE2MzQsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQzNH0.LHoaGipP7JlkmNmCsz6fBKqLJCEvZLO9w0prjc6TkD1rNnO3LLFa-fqGmf2Zig6ChupFnpsLYzdi1ONSdEaB8HYCtz6Su1E_tl-ny0Y2R6p1eDBFZHNo6qpOlDahj_FojELIP6rMT5l8ZlQxw4zXJK2XGzDFz14fSGm8TOJUYYH13oAruGEZ_BXs4r4LT0u96rzS_d6htNLFEIdsNfrTiJjfw5ihi4mqCswgce2eX1ZruGJbIvU54fx2o8vwssp2VYTDTYIvwDlNZ2wE2_5Srxv7-B7hegC6USw6xh0ZiJY0hB3OuoWkiHCqHlpPgxezOJz1vCIVbQBW0OlI31f8vg'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Link:
Content-Type: application/hal+json
Content-Length: 21906

{
  "_embedded" : {
    "plans" : [ {
      "pin" : "PIN:0000000001",
      "tpn" : "TPN:000000001",
      "attemptTypeName" : "crispr",
      "funderNames" : [ "KOMP" ],
      "workUnitName" : "BCM",
      "workGroupName" : "BaSH",
      "comment" : null,
      "crisprAttempt" : {
        "miDate" : "2019-02-26",
        "experimental" : false,
        "comment" : "crispr plan comment",
        "mutagenesisExternalRef" : "MF-26326",
        "imitsMiAttemptId" : 20043,
        "attemptExternalRef" : "Attempt external ref",
        "embryoTransferDay" : "Same Day",
        "totalTransferred" : 72,
        "nucleases" : [ {
          "id" : 1,
          "typeName" : "Cas9",
          "concentration" : 250.0,
          "className" : "protein"
        } ],
        "guides" : [ {
          "id" : 1,
          "sequence" : "CTTCACGTACCAAGGAGGGGTGG",
          "guideSequence" : "CTTCACGTACCAAGGAGGGG",
          "pam" : "TGG",
          "chr" : "X",
          "start" : 45334016,
          "stop" : 45334038,
          "strand" : "+",
          "genomeBuild" : "GRCm39",
          "grnaConcentration" : 300.0,
          "truncatedGuide" : true,
          "reversed" : false,
          "sangerService" : false,
          "gid" : "GID:00000000001",
          "formatName" : "sgRNA",
          "sourceName" : "commercial"
        } ],
        "mutagenesisDonors" : [ {
          "id" : 1,
          "concentration" : 5.0,
          "vectorName" : "pUC18_Ikzf2_conditional",
          "oligoSequenceFasta" : "ATAATTGGCAGCCTGATTAGAAGAATGCCCATCTTGTCTAGTGACACATTAGAACAATGAGTAATTGCTCGATGCGGATCCATAACTTCGTATAGCATACATTATACGAAGTTATTCTCTGGGATTAAGAAAAAACTAACATATGAAACAGAAGCCCAGACATCTAAAACCACAAAGA",
          "preparationTypeName" : "Circular"
        } ],
        "reagents" : [ {
          "id" : 1,
          "reagentName" : "Ligase IV",
          "reagentDescription" : "NHEJ Inhibitor",
          "concentration" : 334.0
        } ],
        "genotypePrimers" : [ {
          "id" : 1,
          "genomicStartCoordinate" : 1,
          "genomicEndCoordinate" : 200,
          "name" : "Gpr68wtR",
          "sequence" : "GTAGAGGGACAGGCAGTTGG"
        } ],
        "totalEmbryosInjected" : 72,
        "totalEmbryosSurvived" : 70,
        "embryo2Cell" : "20043",
        "assay" : {
          "id" : 1,
          "typeName" : "T7EN1",
          "numFounderPups" : 26,
          "numFounderSelectedForBreeding" : 1,
          "founderNumAssays" : 26,
          "numDeletionG0Mutants" : 1,
          "numG0WhereMutationDetected" : 1,
          "numHdrG0Mutants" : 1,
          "numHdrG0MutantsAllDonorsInserted" : 0,
          "numHdrG0MutantsSubsetDonorsInserted" : 0,
          "numHrG0Mutants" : 0,
          "numNhejG0Mutants" : 0
        },
        "strainInjectedName" : "C57BL/6NJ"
      },
      "typeName" : "production",
      "statusName" : "Founder Obtained",
      "summaryStatusName" : "Genotype Confirmed",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001"
        },
        "project" : {
          "href" : "http://localhost:8080/api/projects/TPN:000000001"
        }
      },
      "statusDates" : [ {
        "statusName" : "Plan Created",
        "date" : "2018-01-15T00:00:00.706639"
      }, {
        "statusName" : "Attempt In Progress",
        "date" : "2018-01-16T00:00:00.706639"
      }, {
        "statusName" : "Founder Obtained",
        "date" : "2018-02-22T20:18:00.706639"
      }, {
        "statusName" : "Embryos Obtained",
        "date" : "2018-04-04T14:32:00.706639"
      } ],
      "summaryStatusDates" : [ {
        "statusName" : "Genotype Confirmed",
        "date" : "2019-08-06T20:09:51.706639"
      } ],
      "statusTransition" : {
        "currentStatus" : "Founder Obtained",
        "transitions" : [ {
          "action" : "abortWhenFounderObtained",
          "description" : "Abort the plan after a founder obtained",
          "triggeredByUser" : true,
          "available" : false,
          "note" : "The plan has colonies that are not aborted. Please abort them first",
          "nextStatus" : "Attempt Aborted"
        } ],
        "actionToExecute" : null
      }
    }, {
      "pin" : "PIN:0000000222",
      "tpn" : "TPN:000000222",
      "attemptTypeName" : "crispr",
      "funderNames" : [ "KOMP2" ],
      "workUnitName" : "UCD",
      "workGroupName" : "DTCC",
      "comment" : null,
      "crisprAttempt" : {
        "miDate" : "2018-03-26",
        "experimental" : false,
        "comment" : "crispr plan comment",
        "mutagenesisExternalRef" : "MF-26328",
        "imitsMiAttemptId" : 20044,
        "attemptExternalRef" : "Attempt external ref 2",
        "embryoTransferDay" : "Same Day",
        "totalTransferred" : 72,
        "nucleases" : [ {
          "id" : 2,
          "typeName" : "Cas9",
          "concentration" : 250.0,
          "className" : "protein"
        } ],
        "guides" : [ {
          "id" : 2,
          "sequence" : "CCATGATCTAATCTGTGGTTAAA",
          "guideSequence" : "CCATGATCTAATCTGTGGTTAAA",
          "pam" : "AAA",
          "chr" : "14",
          "start" : 57150316,
          "stop" : 57150338,
          "strand" : "+",
          "genomeBuild" : "GRCm39",
          "grnaConcentration" : 300.0,
          "truncatedGuide" : false,
          "reversed" : false,
          "sangerService" : false,
          "gid" : "GID:00000000002",
          "formatName" : "cr-tracrRNA",
          "sourceName" : "in-house"
        } ],
        "mutagenesisDonors" : [ ],
        "reagents" : [ ],
        "genotypePrimers" : [ {
          "id" : 2,
          "genomicStartCoordinate" : 1,
          "genomicEndCoordinate" : 200,
          "name" : "Gpr68wtR",
          "sequence" : "GTAGAGGGACAGGCAGTTGG"
        } ],
        "totalEmbryosInjected" : 70,
        "totalEmbryosSurvived" : 64,
        "embryo2Cell" : "20044",
        "assay" : {
          "id" : 2,
          "typeName" : "LOA",
          "numFounderPups" : 4,
          "numFounderSelectedForBreeding" : 1,
          "founderNumAssays" : 4,
          "numDeletionG0Mutants" : 1,
          "numG0WhereMutationDetected" : 1,
          "numHdrG0Mutants" : null,
          "numHdrG0MutantsAllDonorsInserted" : null,
          "numHdrG0MutantsSubsetDonorsInserted" : null,
          "numHrG0Mutants" : null,
          "numNhejG0Mutants" : null
        },
        "strainInjectedName" : "C57BL/6NJ"
      },
      "typeName" : "production",
      "statusName" : "Founder Obtained",
      "summaryStatusName" : "Founder Obtained",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000222"
        },
        "project" : {
          "href" : "http://localhost:8080/api/projects/TPN:000000222"
        }
      },
      "statusDates" : [ {
        "statusName" : "Plan Created",
        "date" : "2018-06-25T00:00:00"
      }, {
        "statusName" : "Attempt In Progress",
        "date" : "2018-06-25T00:00:00"
      }, {
        "statusName" : "Founder Obtained",
        "date" : "2020-01-10T20:25:12.783017"
      }, {
        "statusName" : "Embryos Obtained",
        "date" : "2020-01-10T20:25:12.783017"
      } ],
      "summaryStatusDates" : [ {
        "statusName" : "Founder Obtained",
        "date" : "2020-01-10T20:25:12.783017"
      } ],
      "statusTransition" : {
        "currentStatus" : "Founder Obtained",
        "transitions" : [ {
          "action" : "abortWhenFounderObtained",
          "description" : "Abort the plan after a founder obtained",
          "triggeredByUser" : true,
          "available" : true,
          "note" : null,
          "nextStatus" : "Attempt Aborted"
        } ],
        "actionToExecute" : null
      }
    }, {
      "pin" : "PIN:0000000003",
      "tpn" : "TPN:000000001",
      "attemptTypeName" : "adult and embryo phenotyping",
      "funderNames" : [ "KOMP" ],
      "workUnitName" : "BCM",
      "workGroupName" : "BaSH",
      "comment" : null,
      "phenotypingStartingPoint" : {
        "_links" : {
          "outcome" : {
            "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000001"
          },
          "productionPlan" : {
            "href" : "http://localhost:8080/api/plans/PIN:0000000001"
          }
        },
        "outcomeTpo" : "TPO:000000000001",
        "productionPlanPin" : "PIN:0000000001"
      },
      "phenotypingAttemptResponse" : {
        "doNotCountTowardsCompleteness" : false,
        "phenotypingExternalRef" : "CR10129",
        "imitsPhenotypeAttemptId" : 9040,
        "imitsPhenotypingProductionId" : 9243,
        "imitsParentColonyId" : 20829,
        "phenotypingBackgroundStrainName" : "C57BL/6NJ",
        "cohortProductionWorkUnitName" : "BCM"
      },
      "typeName" : "phenotyping",
      "statusName" : "Plan Created",
      "summaryStatusName" : "Plan Created",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000003"
        },
        "project" : {
          "href" : "http://localhost:8080/api/projects/TPN:000000001"
        }
      },
      "statusDates" : [ {
        "statusName" : "Plan Created",
        "date" : "2020-04-14T12:46:24.706639"
      } ],
      "summaryStatusDates" : [ {
        "statusName" : "Plan Created",
        "date" : "2020-04-14T12:46:24.706639"
      } ],
      "statusTransition" : {
        "currentStatus" : "Plan Created",
        "transitions" : [ {
          "action" : "abandonWhenCreated",
          "description" : "Abandon a phenotyping plan that has no associated phenotyping stage information",
          "triggeredByUser" : true,
          "available" : false,
          "note" : "The plan already has phenotyping stages. Please abort the plan.",
          "nextStatus" : "Plan Abandoned"
        }, {
          "action" : "abortPhenotypingPlan",
          "description" : "Abort a phenotyping plan that has associated aborted phenotyping stage information",
          "triggeredByUser" : true,
          "available" : true,
          "note" : null,
          "nextStatus" : "Phenotyping Plan Aborted"
        } ],
        "actionToExecute" : null
      }
    }, {
      "pin" : "PIN:0000000004",
      "tpn" : "TPN:000000001",
      "attemptTypeName" : "adult and embryo phenotyping",
      "funderNames" : [ ],
      "workUnitName" : "BCM",
      "workGroupName" : "BaSH",
      "comment" : null,
      "phenotypingStartingPoint" : {
        "_links" : {
          "outcome" : {
            "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000002"
          },
          "productionPlan" : {
            "href" : "http://localhost:8080/api/plans/PIN:0000000001"
          }
        },
        "outcomeTpo" : "TPO:000000000002",
        "productionPlanPin" : "PIN:0000000001"
      },
      "phenotypingAttemptResponse" : {
        "doNotCountTowardsCompleteness" : false,
        "phenotypingExternalRef" : "JR34077",
        "phenotypingBackgroundStrainName" : "C57BL/6NJ",
        "cohortProductionWorkUnitName" : "BCM"
      },
      "typeName" : "phenotyping",
      "statusName" : "Plan Created",
      "summaryStatusName" : "Plan Created",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000004"
        },
        "project" : {
          "href" : "http://localhost:8080/api/projects/TPN:000000001"
        }
      },
      "statusDates" : [ {
        "statusName" : "Plan Created",
        "date" : "2018-02-22T20:18:00.706639"
      } ],
      "summaryStatusDates" : [ {
        "statusName" : "Plan Created",
        "date" : "2020-04-14T12:46:24.706639"
      } ],
      "statusTransition" : {
        "currentStatus" : "Plan Created",
        "transitions" : [ {
          "action" : "abandonWhenCreated",
          "description" : "Abandon a phenotyping plan that has no associated phenotyping stage information",
          "triggeredByUser" : true,
          "available" : false,
          "note" : "The plan already has phenotyping stages. Please abort the plan.",
          "nextStatus" : "Plan Abandoned"
        }, {
          "action" : "abortPhenotypingPlan",
          "description" : "Abort a phenotyping plan that has associated aborted phenotyping stage information",
          "triggeredByUser" : true,
          "available" : true,
          "note" : null,
          "nextStatus" : "Phenotyping Plan Aborted"
        } ],
        "actionToExecute" : null
      }
    }, {
      "pin" : "PIN:0000000009",
      "tpn" : "TPN:000000003",
      "attemptTypeName" : "es cell allele modification",
      "funderNames" : [ "KOMP" ],
      "workUnitName" : "BCM",
      "workGroupName" : "BaSH",
      "comment" : null,
      "esCellAlleleModificationStartingPoint" : {
        "_links" : {
          "outcome" : {
            "href" : "http://localhost:8080/api/plans/PIN:0000000010/outcomes/TPO:000000000003"
          },
          "productionPlan" : {
            "href" : "http://localhost:8080/api/plans/PIN:0000000010"
          }
        },
        "outcomeTpo" : "TPO:000000000003",
        "productionPlanPin" : "PIN:0000000010"
      },
      "esCellAlleleModificationAttempt" : {
        "modificationExternalRef" : "GSF-EPD0045_1_B11-3-1",
        "numberOfCreMatingsSuccessful" : 1,
        "tatCre" : false,
        "deleterStrainName" : "BALB/cJ",
        "imitsMouseAlleleModId" : 1775,
        "imitsTargRepAlleleId" : 1878
      },
      "typeName" : "production",
      "statusName" : "Cre Excision Complete",
      "summaryStatusName" : "Cre Excision Complete",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000009"
        },
        "project" : {
          "href" : "http://localhost:8080/api/projects/TPN:000000003"
        }
      },
      "statusDates" : [ {
        "statusName" : "Plan Created",
        "date" : "2012-11-06T12:01:00"
      }, {
        "statusName" : "Mouse Allele Modification Registered",
        "date" : "2012-11-06T12:08:00"
      }, {
        "statusName" : "Cre Excision Started",
        "date" : "2013-02-02T12:42:00"
      }, {
        "statusName" : "Cre Excision Complete",
        "date" : "2013-04-09T12:42:00"
      } ],
      "summaryStatusDates" : [ {
        "statusName" : "Plan Created",
        "date" : "2012-11-06T12:01:00"
      }, {
        "statusName" : "Mouse Allele Modification Registered",
        "date" : "2012-11-06T12:08:00"
      }, {
        "statusName" : "Cre Excision Started",
        "date" : "2013-02-02T12:42:00"
      }, {
        "statusName" : "Cre Excision Complete",
        "date" : "2013-04-09T12:42:00"
      } ],
      "statusTransition" : {
        "currentStatus" : "Cre Excision Complete",
        "transitions" : [ {
          "action" : "updateToMouseAlleleModificationGenotypeConfirmed",
          "description" : "Update to Mouse Allele Modification Genotype Confirmed.",
          "triggeredByUser" : false,
          "available" : false,
          "note" : "A genotyped confirmed colony needs to be associated with the plan.",
          "nextStatus" : "Mouse Allele Modification Genotype Confirmed"
        }, {
          "action" : "abortWhenCreExcisionComplete",
          "description" : "Abort an allele modification plan when Cre excision is complete",
          "triggeredByUser" : true,
          "available" : true,
          "note" : null,
          "nextStatus" : "Mouse Allele Modification Aborted"
        } ],
        "actionToExecute" : null
      }
    }, {
      "pin" : "PIN:0000000010",
      "tpn" : "TPN:000000003",
      "attemptTypeName" : "es cell",
      "funderNames" : [ "KOMP" ],
      "workUnitName" : "BCM",
      "workGroupName" : "BaSH",
      "comment" : null,
      "esCellAttempt" : {
        "miDate" : "2007-04-24",
        "experimental" : false,
        "comment" : "additional information",
        "blastStrainName" : "C57BL/6NJ",
        "totalBlastsInjected" : 44,
        "totalTransferred" : 44,
        "numberSurrogatesReceiving" : 0,
        "totalPupsBorn" : 25,
        "totalFemaleChimeras" : 5,
        "totalMaleChimeras" : 2,
        "totalChimeras" : 7,
        "numberOfMalesWith0To39PercentChimerism" : 1,
        "numberOfMalesWith40To79PercentChimerism" : 1,
        "numberOfMalesWith80To99PercentChimerism" : 0,
        "numberOfMalesWith100PercentChimerism" : 0,
        "testCrossStrainName" : "BALB/cJ",
        "dateChimerasMated" : "2007-06-18",
        "numberOfChimeraMatingsAttempted" : 6,
        "numberOfChimeraMatingsSuccessful" : 5,
        "numberOfChimerasWithGltFromCct" : 1,
        "numberOfChimerasWithGltFromGenotyping" : 1,
        "numberOfChimerasWith0To9PercentGlt" : 0,
        "numberOfChimerasWith10To49PercentGlt" : 1,
        "numberOfChimerasWith50To99PercentGlt" : 0,
        "numberOfChimerasWith100PercentGlt" : 0,
        "totalF1MiceFromMatings" : 52,
        "numberOfCctOffspring" : 3,
        "cassetteTransmissionVerified" : "2007-10-21",
        "numberOfHetOffspring" : 2,
        "numberOfLiveGltOffspring" : 0,
        "esCellName" : "EPD0045_1_A11",
        "imitsMiAttemptId" : 2030,
        "attemptExternalRef" : "MAKE"
      },
      "typeName" : "production",
      "statusName" : "Chimeras/Founder Obtained",
      "summaryStatusName" : "Genotype Confirmed",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000010"
        },
        "project" : {
          "href" : "http://localhost:8080/api/projects/TPN:000000003"
        }
      },
      "statusDates" : [ {
        "statusName" : "Plan Created",
        "date" : "2007-04-24T00:00:00"
      }, {
        "statusName" : "Attempt In Progress",
        "date" : "2007-05-18T00:00:00"
      }, {
        "statusName" : "Chimeras/Founder Obtained",
        "date" : "2007-10-20T00:00:00"
      } ],
      "summaryStatusDates" : [ {
        "statusName" : "Chimeras/Founder Obtained",
        "date" : "2007-10-21T00:00:00"
      } ],
      "statusTransition" : {
        "currentStatus" : "Chimeras/Founder Obtained",
        "transitions" : [ {
          "action" : "abortWhenChimerasFounderObtained",
          "description" : "Abort the plan after a founder obtained",
          "triggeredByUser" : true,
          "available" : false,
          "note" : "The plan has colonies that are not aborted. Please abort them first",
          "nextStatus" : "Attempt Aborted"
        } ],
        "actionToExecute" : null
      }
    }, {
      "pin" : "PIN:0000000011",
      "tpn" : "TPN:000000004",
      "attemptTypeName" : "crispr allele modification",
      "funderNames" : [ "KOMP" ],
      "workUnitName" : "BCM",
      "workGroupName" : "BaSH",
      "comment" : null,
      "crisprAlleleModificationStartingPoint" : {
        "_links" : {
          "outcome" : {
            "href" : "http://localhost:8080/api/plans/PIN:0000000011/outcomes/TPO:000000000005"
          },
          "productionPlan" : {
            "href" : "http://localhost:8080/api/plans/PIN:0000000011"
          }
        },
        "outcomeTpo" : "TPO:000000000005",
        "productionPlanPin" : "PIN:0000000011"
      },
      "crisprAlleleModificationAttempt" : {
        "modificationExternalRef" : "GSF-EPD0045_1_B11-3-1",
        "numberOfCreMatingsSuccessful" : 1,
        "tatCre" : false,
        "deleterStrainName" : "BALB/cJ"
      },
      "typeName" : "production",
      "statusName" : "Cre Excision Complete",
      "summaryStatusName" : "Cre Excision Complete",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000011"
        },
        "project" : {
          "href" : "http://localhost:8080/api/projects/TPN:000000004"
        }
      },
      "statusDates" : [ {
        "statusName" : "Plan Created",
        "date" : "2012-11-06T12:01:00"
      }, {
        "statusName" : "Mouse Allele Modification Registered",
        "date" : "2012-11-06T12:08:00"
      }, {
        "statusName" : "Cre Excision Started",
        "date" : "2013-02-02T12:42:00"
      }, {
        "statusName" : "Cre Excision Complete",
        "date" : "2013-04-09T12:42:00"
      } ],
      "summaryStatusDates" : [ {
        "statusName" : "Plan Created",
        "date" : "2012-11-06T12:01:00"
      }, {
        "statusName" : "Mouse Allele Modification Registered",
        "date" : "2012-11-06T12:08:00"
      }, {
        "statusName" : "Cre Excision Started",
        "date" : "2013-02-02T12:42:00"
      }, {
        "statusName" : "Cre Excision Complete",
        "date" : "2013-04-09T12:42:00"
      } ],
      "statusTransition" : {
        "currentStatus" : "Cre Excision Complete",
        "transitions" : [ {
          "action" : "updateToMouseAlleleModificationGenotypeConfirmed",
          "description" : "Update to Mouse Allele Modification Genotype Confirmed.",
          "triggeredByUser" : false,
          "available" : false,
          "note" : "A genotyped confirmed colony needs to be associated with the plan.",
          "nextStatus" : "Mouse Allele Modification Genotype Confirmed"
        }, {
          "action" : "abortWhenCreExcisionComplete",
          "description" : "Abort an allele modification plan when Cre excision is complete",
          "triggeredByUser" : true,
          "available" : true,
          "note" : null,
          "nextStatus" : "Mouse Allele Modification Aborted"
        } ],
        "actionToExecute" : null
      }
    } ]
  },
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans{?pin,tpn,workUnitName,workGroupName,statusName,summaryStatusName,typeName,attemptTypeName,imitsMiAttemptId,imitsPhenotypeAttemptId,phenotypingExternalRef,doNotCountTowardsCompleteness}",
      "templated" : true
    }
  },
  "page" : {
    "size" : 20,
    "totalElements" : 7,
    "totalPages" : 1,
    "number" : 0
  }
}

$ curl 'http://localhost:8080/api/plans?statusName=Founder%20Obtained&attemptTypeName=crispr' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6InFhTVFMc0Y3RmYwZ0J1R2x1bExZRWciLCJpYXQiOjE3MDg0NDE2MjQsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQyNH0.b6de6QENuLJ56KUUDeRZon-u0KJ4sMVbVm6PnwZQ2A6OE3Ppk9BtwKZm2cNsEgfLncGphytYyC5cdXJpxOisHMFAFqGcNoOJzshlnAZ6qde-Qla98nIKswTTEmqoT8mGGtiJi5GY8O1wforen92cmSelPiSAJX7Sdvhp0O4T9Bgow3AbkZzsF4y25niK6Nks-h0lbgDg8VnoW_rLEZAgOU4gocy08m3Gd-Kg2d2b4zLiCHfDtVi5zD2dvmoOTjsR6hJGjTOiuTwIdRKwQMaj0MrQ9F0_NZ75UL6AEfWyRT07z0lknDK4CcHdG59gqCXuV55_1M_Ejr3C3HSnFH6nbg'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Link:
Content-Type: application/hal+json
Content-Length: 8176

{
  "_embedded" : {
    "plans" : [ {
      "pin" : "PIN:0000000001",
      "tpn" : "TPN:000000001",
      "attemptTypeName" : "crispr",
      "funderNames" : [ "KOMP" ],
      "workUnitName" : "BCM",
      "workGroupName" : "BaSH",
      "comment" : null,
      "crisprAttempt" : {
        "miDate" : "2019-02-26",
        "experimental" : false,
        "comment" : "crispr plan comment",
        "mutagenesisExternalRef" : "MF-26326",
        "imitsMiAttemptId" : 20043,
        "attemptExternalRef" : "Attempt external ref",
        "embryoTransferDay" : "Same Day",
        "totalTransferred" : 72,
        "nucleases" : [ {
          "id" : 1,
          "typeName" : "Cas9",
          "concentration" : 250.0,
          "className" : "protein"
        } ],
        "guides" : [ {
          "id" : 1,
          "sequence" : "CTTCACGTACCAAGGAGGGGTGG",
          "guideSequence" : "CTTCACGTACCAAGGAGGGG",
          "pam" : "TGG",
          "chr" : "X",
          "start" : 45334016,
          "stop" : 45334038,
          "strand" : "+",
          "genomeBuild" : "GRCm39",
          "grnaConcentration" : 300.0,
          "truncatedGuide" : true,
          "reversed" : false,
          "sangerService" : false,
          "gid" : "GID:00000000001",
          "formatName" : "sgRNA",
          "sourceName" : "commercial"
        } ],
        "mutagenesisDonors" : [ {
          "id" : 1,
          "concentration" : 5.0,
          "vectorName" : "pUC18_Ikzf2_conditional",
          "oligoSequenceFasta" : "ATAATTGGCAGCCTGATTAGAAGAATGCCCATCTTGTCTAGTGACACATTAGAACAATGAGTAATTGCTCGATGCGGATCCATAACTTCGTATAGCATACATTATACGAAGTTATTCTCTGGGATTAAGAAAAAACTAACATATGAAACAGAAGCCCAGACATCTAAAACCACAAAGA",
          "preparationTypeName" : "Circular"
        } ],
        "reagents" : [ {
          "id" : 1,
          "reagentName" : "Ligase IV",
          "reagentDescription" : "NHEJ Inhibitor",
          "concentration" : 334.0
        } ],
        "genotypePrimers" : [ {
          "id" : 1,
          "genomicStartCoordinate" : 1,
          "genomicEndCoordinate" : 200,
          "name" : "Gpr68wtR",
          "sequence" : "GTAGAGGGACAGGCAGTTGG"
        } ],
        "totalEmbryosInjected" : 72,
        "totalEmbryosSurvived" : 70,
        "embryo2Cell" : "20043",
        "assay" : {
          "id" : 1,
          "typeName" : "T7EN1",
          "numFounderPups" : 26,
          "numFounderSelectedForBreeding" : 1,
          "founderNumAssays" : 26,
          "numDeletionG0Mutants" : 1,
          "numG0WhereMutationDetected" : 1,
          "numHdrG0Mutants" : 1,
          "numHdrG0MutantsAllDonorsInserted" : 0,
          "numHdrG0MutantsSubsetDonorsInserted" : 0,
          "numHrG0Mutants" : 0,
          "numNhejG0Mutants" : 0
        },
        "strainInjectedName" : "C57BL/6NJ"
      },
      "typeName" : "production",
      "statusName" : "Founder Obtained",
      "summaryStatusName" : "Genotype Confirmed",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001"
        },
        "project" : {
          "href" : "http://localhost:8080/api/projects/TPN:000000001"
        }
      },
      "statusDates" : [ {
        "statusName" : "Plan Created",
        "date" : "2018-01-15T00:00:00.706639"
      }, {
        "statusName" : "Attempt In Progress",
        "date" : "2018-01-16T00:00:00.706639"
      }, {
        "statusName" : "Founder Obtained",
        "date" : "2018-02-22T20:18:00.706639"
      }, {
        "statusName" : "Embryos Obtained",
        "date" : "2018-04-04T14:32:00.706639"
      } ],
      "summaryStatusDates" : [ {
        "statusName" : "Genotype Confirmed",
        "date" : "2019-08-06T20:09:51.706639"
      } ],
      "statusTransition" : {
        "currentStatus" : "Founder Obtained",
        "transitions" : [ {
          "action" : "abortWhenFounderObtained",
          "description" : "Abort the plan after a founder obtained",
          "triggeredByUser" : true,
          "available" : false,
          "note" : "The plan has colonies that are not aborted. Please abort them first",
          "nextStatus" : "Attempt Aborted"
        } ],
        "actionToExecute" : null
      }
    }, {
      "pin" : "PIN:0000000222",
      "tpn" : "TPN:000000222",
      "attemptTypeName" : "crispr",
      "funderNames" : [ "KOMP2" ],
      "workUnitName" : "UCD",
      "workGroupName" : "DTCC",
      "comment" : null,
      "crisprAttempt" : {
        "miDate" : "2018-03-26",
        "experimental" : false,
        "comment" : "crispr plan comment",
        "mutagenesisExternalRef" : "MF-26328",
        "imitsMiAttemptId" : 20044,
        "attemptExternalRef" : "Attempt external ref 2",
        "embryoTransferDay" : "Same Day",
        "totalTransferred" : 72,
        "nucleases" : [ {
          "id" : 2,
          "typeName" : "Cas9",
          "concentration" : 250.0,
          "className" : "protein"
        } ],
        "guides" : [ {
          "id" : 2,
          "sequence" : "CCATGATCTAATCTGTGGTTAAA",
          "guideSequence" : "CCATGATCTAATCTGTGGTTAAA",
          "pam" : "AAA",
          "chr" : "14",
          "start" : 57150316,
          "stop" : 57150338,
          "strand" : "+",
          "genomeBuild" : "GRCm39",
          "grnaConcentration" : 300.0,
          "truncatedGuide" : false,
          "reversed" : false,
          "sangerService" : false,
          "gid" : "GID:00000000002",
          "formatName" : "cr-tracrRNA",
          "sourceName" : "in-house"
        } ],
        "mutagenesisDonors" : [ ],
        "reagents" : [ ],
        "genotypePrimers" : [ {
          "id" : 2,
          "genomicStartCoordinate" : 1,
          "genomicEndCoordinate" : 200,
          "name" : "Gpr68wtR",
          "sequence" : "GTAGAGGGACAGGCAGTTGG"
        } ],
        "totalEmbryosInjected" : 70,
        "totalEmbryosSurvived" : 64,
        "embryo2Cell" : "20044",
        "assay" : {
          "id" : 2,
          "typeName" : "LOA",
          "numFounderPups" : 4,
          "numFounderSelectedForBreeding" : 1,
          "founderNumAssays" : 4,
          "numDeletionG0Mutants" : 1,
          "numG0WhereMutationDetected" : 1,
          "numHdrG0Mutants" : null,
          "numHdrG0MutantsAllDonorsInserted" : null,
          "numHdrG0MutantsSubsetDonorsInserted" : null,
          "numHrG0Mutants" : null,
          "numNhejG0Mutants" : null
        },
        "strainInjectedName" : "C57BL/6NJ"
      },
      "typeName" : "production",
      "statusName" : "Founder Obtained",
      "summaryStatusName" : "Founder Obtained",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000222"
        },
        "project" : {
          "href" : "http://localhost:8080/api/projects/TPN:000000222"
        }
      },
      "statusDates" : [ {
        "statusName" : "Plan Created",
        "date" : "2018-06-25T00:00:00"
      }, {
        "statusName" : "Attempt In Progress",
        "date" : "2018-06-25T00:00:00"
      }, {
        "statusName" : "Founder Obtained",
        "date" : "2020-01-10T20:25:12.783017"
      }, {
        "statusName" : "Embryos Obtained",
        "date" : "2020-01-10T20:25:12.783017"
      } ],
      "summaryStatusDates" : [ {
        "statusName" : "Founder Obtained",
        "date" : "2020-01-10T20:25:12.783017"
      } ],
      "statusTransition" : {
        "currentStatus" : "Founder Obtained",
        "transitions" : [ {
          "action" : "abortWhenFounderObtained",
          "description" : "Abort the plan after a founder obtained",
          "triggeredByUser" : true,
          "available" : true,
          "note" : null,
          "nextStatus" : "Attempt Aborted"
        } ],
        "actionToExecute" : null
      }
    } ]
  },
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans?statusName=Founder Obtained&attemptTypeName=crispr{&pin,tpn,workUnitName,workGroupName,summaryStatusName,typeName,imitsMiAttemptId,imitsPhenotypeAttemptId,phenotypingExternalRef,doNotCountTowardsCompleteness}",
      "templated" : true
    }
  },
  "page" : {
    "size" : 20,
    "totalElements" : 2,
    "totalPages" : 1,
    "number" : 0
  }
}

$ curl 'http://localhost:8080/api/plans/PIN:0000000222/history' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6Imd5WFp4R0VsRi10Wk5WVWJ1NnVJdFEiLCJpYXQiOjE3MDg0NDE2NDAsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ0MH0.Sx7BfT6Sxxr1b4UgPeVU7iYOtoJMmwDpSMR21VYObPPtdz2_4zRcYKAR01DsEiL0EfqSqKmU9W3nLM0MqKbAI-EaulYaX8CgE3DPwBSZHSGvEiZmTdNquX5cbU1x7OS2s2NTVhuexWo-HKuf736z14lkETPnfxYr-z8mJx8mv2-DPphrxa1lTg-HKpjrqdxmboTAj4hDvcxD-c8oUfsDMLzWBgv77LK2nunULqVppzfkI75WaTzPTp7PvsxlFKEufdKwiPDi8bicaxnS5N6HElrqtgGfYDjwUX2kB_OQquXUd81Q79sd9x_UWVh90AimcoeNDCr5QvpKZmGuWbGsFA'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/json
Content-Length: 276

[ {
  "id" : 1,
  "user" : "gentar_test_user1@gentar.org",
  "date" : "2020-06-17T15:08:56.643268",
  "comment" : "Plan updated",
  "details" : [ {
    "field" : "comment",
    "oldValue" : "comment",
    "newValue" : "New Plan comment",
    "note" : "Field changed"
  } ]
} ]

POST /api/plans HTTP/1.1
Content-Type: application/json
Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IkpVRXNWTFZfMlRJdXN3SnVvYjN0QmciLCJpYXQiOjE3MDg0NDE2MzUsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQzNX0.kfWuYzrQrnOJruvJZnLehlqdm1Dv8BD7PebNBQvxbvkHZ-3nGjlsFD9wrNR2HDYc9GrlYR0VCjUmHODGA4RUCdBqXSq7wXtTLytr1UeNyI9DhdidYsqxUXyjuYtaK3NGNN6nGRXRQbsImOjW7Wfm22GBvyjFWjowsPFvGYvX_p5kp-kiLww6q7ls906wgg1ZEZYhpjIjcghzVHa50OeNBqcjTiLt5nyoOylgMX1vrcK1BT6VdRWGHma-bJ1DSzafF0_WhEBJV5mPHgx-Ue_vvNv_IXKWglmbHU6pohIk0o6q1PKzaIHytJGEC_6GvOSb9m7poQMwbbdCpCIGTPxpAA
Content-Length: 2292
Host: localhost:8080

{
  "tpn" : "TPN:000000001",
  "attemptTypeName" : "crispr",
  "funderNames" : [ "KOMP" ],
  "workUnitName" : "BCM",
  "workGroupName" : "BaSH",
  "comment" : "example of crispr plan creation",
  "crisprAttempt" : {
    "miDate" : "2019-02-26",
    "experimental" : true,
    "comment" : "crispr plan comment",
    "mutagenesisExternalRef" : "MF-26326",
    "attemptExternalRef" : "attempt external reference",
    "embryoTransferDay" : "Same Day",
    "totalTransferred" : 72,
    "nucleases" : [ {
      "typeName" : "Cas9",
      "concentration" : 250.0,
      "className" : "protein"
    } ],
    "guides" : [ {
      "chr" : "X",
      "start" : 46245139,
      "stop" : 46245161,
      "grnaConcentration" : 300.0,
      "sequence" : "CTTCACGTACCAAGGAGGGGTGG",
      "truncatedGuide" : true,
      "strand" : "+",
      "genomeBuild" : "GRCm38",
      "pam" : "TGG",
      "guideSequence" : "CTTCACGTACCAAGGAGGGG",
      "formatName" : "sgRNA",
      "sourceName" : "commercial",
      "gid" : "GID:00000000001"
    } ],
    "mutagenesisDonors" : [ {
      "concentration" : 5.0,
      "vectorName" : "pUC18_Ikzf2_conditional",
      "oligoSequenceFasta" : "ATAATTGGCAGCCTGATTAGAAGAATGCCCATCTTGTCTAGTGACACATTAGAACAATGAGTAATTGCTCGATGCGGATCCATAACTTCGTATAGCATACATTATACGAAGTTATTCTCTGGGATTAAGAAAAAACTAACATATGAAACAGAAGCCCAGACATCTAAAACCACAAAGA",
      "preparationTypeName" : "Circular"
    } ],
    "reagents" : [ {
      "reagentName" : "Ligase IV",
      "reagentDescription" : "NHEJ Inhibitor",
      "concentration" : 334.0
    } ],
    "genotypePrimers" : [ {
      "genomicStartCoordinate" : 1,
      "genomicEndCoordinate" : 200,
      "name" : "Gpr68wtR",
      "sequence" : "GTAGAGGGACAGGCAGTTGG"
    } ],
    "totalEmbryosInjected" : 72,
    "totalEmbryosSurvived" : 70,
    "embryo2Cell" : "20043",
    "assay" : {
      "typeName" : "T7EN1",
      "numFounderPups" : 26,
      "numFounderSelectedForBreeding" : 1,
      "founderNumAssays" : 26,
      "numDeletionG0Mutants" : 1,
      "numG0WhereMutationDetected" : 1,
      "numHdrG0Mutants" : 1,
      "numHdrG0MutantsAllDonorsInserted" : 0,
      "numHdrG0MutantsSubsetDonorsInserted" : 0,
      "numHrG0Mutants" : 0,
      "numNhejG0Mutants" : 0
    },
    "strainInjectedName" : "C57BL/6NJ"
  },
  "typeName" : "production"
}

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 289

{
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000014"
    }
  },
  "history" : [ {
    "id" : 1,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:16.243658124",
    "comment" : "Plan created",
    "details" : [ ]
  } ]
}

POST /api/plans HTTP/1.1
Content-Type: application/json
Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IjZ5cHpHenZ0elJMZW5EWmwxRkdxbEEiLCJpYXQiOjE3MDg0NDE2MzYsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQzNn0.WrOUdUVJwUb15JEttHAnLkk7-UkeWeMriU5PlNacFFrP8gYHr5m3-CX5sZGsrBaMXnsjD1ukHHhJX_gkwaPrJ4AY7U7nwcm1vtN9hB7l-ZmC9TwcJhLX1HErU4wV-BjZuGPSn949DAR2eZxt_qSF3tZE4UINevGvB2JZZ9xlUqtcpVRqvK5wShCXnvxyqI41fACpOlT1fCBcrCXxnkJrus8krrWwNoOuU5w5VPuj_v3HPu-6SkWD_L7edhUZDSIhFaMW_9voz5a7hYrOpTu4MhrUB0Cmn1axoKvRoVmGbQF6ciY_hGsLEnP3DHwnF7OP8cNPNlyXYc-kdrGO6zbhUA
Content-Length: 1482
Host: localhost:8080

{
  "tpn" : "TPN:000000003",
  "attemptTypeName" : "es cell",
  "typeName" : "production",
  "funderNames" : [ "KOMP" ],
  "workUnitName" : "BCM",
  "workGroupName" : "BaSH",
  "comment" : "example of es cell plan creation",
  "esCellAttempt" : {
    "esCellName" : "EPD0045_1_A11",
    "miDate" : "2019-02-26",
    "experimental" : true,
    "comment" : "es cell plan comment",
    "mutagenesisExternalRef" : "MF-26326",
    "attemptExternalRef" : "attempt external reference",
    "blastStrainName" : "C57BL/6NJ",
    "totalBlastsInjected" : 10,
    "totalTransferred" : 8,
    "numberSurrogatesReceiving" : 6,
    "totalPupsBorn" : 6,
    "totalFemaleChimeras" : 2,
    "totalMaleChimeras" : 0,
    "numberOfMalesWith0To39PercentChimerism" : 1,
    "numberOfMalesWith40To79PercentChimerism" : 1,
    "numberOfMalesWith80To99PercentChimerism" : 1,
    "numberOfMalesWith100PercentChimerism" : 3,
    "testCrossStrainName" : "C57BL/6NJ",
    "dateChimerasMated" : "2019-02-26",
    "numberOfChimeraMatingsAttempted" : 2,
    "numberOfChimeraMatingsSuccessful" : 1,
    "numberOfChimerasWithGltFromCct" : 2,
    "numberOfChimerasWithGltFromGenotyping" : 2,
    "numberOfChimerasWith0To9PercentGlt" : 1,
    "numberOfChimerasWith10To49PercentGlt" : 1,
    "numberOfChimerasWith50To99PercentGlt" : 1,
    "numberOfChimerasWith100PercentGlt" : 3,
    "totalF1MiceFromMatings" : 4,
    "numberOfCctOffspring" : 2,
    "numberOfHetOffspring" : 2,
    "numberOfLiveGltOffspring" : 1
  }
}

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 289

{
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000015"
    }
  },
  "history" : [ {
    "id" : 1,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:17.000229161",
    "comment" : "Plan created",
    "details" : [ ]
  } ]
}

POST /api/plans/ HTTP/1.1
Content-Type: application/json
Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6ImNsanZRWHVTbERjNXI3VUxidzZyUkEiLCJpYXQiOjE3MDg0NDE2MzAsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQzMH0.CV1HThe9XKZOhPfAI0e6Xu2x6BXSjrxtEQHExzQ08_XhiGLLw_DDm814mv9WG67jHuhFlT_KLitRI2jDPOZbiBOBwlgXuwKAeTzxRfss2gnPsYBq9YltitcpN7cGqlDsdxAOjIxqBIgk7usJSQjR-wn8Vm8LDNKf6Q0Of2lyQjWYHWojfjcQw2fX6xKIablmY0iAw1xe6GZTFM9eghqkchdS_pZW7QIVEtrgA-M49hvhJqBcIDTOO_UTtmntcbZuhZSzs-E0JNWaTCYUkTyrMPVCRCxxD4uaLocHfZ2uo740YKt9cGvXS1B46iARBNDIfcmlC6xrKtqUSt22H7vSvw
Content-Length: 500
Host: localhost:8080

{
  "tpn" : "TPN:000000001",
  "funderNames" : [ ],
  "workUnitName" : "UCD",
  "workGroupName" : "DTCC",
  "comment" : null,
  "attemptTypeName" : "adult and embryo phenotyping",
  "typeName" : "phenotyping",
  "phenotypingStartingPoint" : {
    "outcomeTpo" : "TPO:000000000001"
  },
  "phenotypingAttempt" : {
    "phenotypingExternalRef" : "CR1234",
    "phenotypingBackgroundStrainName" : "C57BL/6NJ",
    "doNotCountTowardsCompleteness" : false,
    "cohortProductionWorkUnitName" : "UCD"
  }
}

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 288

{
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000013"
    }
  },
  "history" : [ {
    "id" : 1,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:11.25602194",
    "comment" : "Plan created",
    "details" : [ ]
  } ]
}

PUT /api/plans/PIN:0000000001 HTTP/1.1
Content-Type: application/json
Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6InJkVGtxdHhEblF4Q3dYZWtYRGZPZWciLCJpYXQiOjE3MDg0NDE2MzgsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQzOH0.VEJUt6Gr_pCNVuuq9Knk5-kT6bnY4K5Oa846t63xpYBIZplq0rnBzEtfEwOajTsG3KEzLa0xZRAv1cenH0q8U9UeqA8V_BOQe-ICO9t69k12_zYOvuUUTDJySxQbUkaZFLkPERShRn_DhrjmxYBV-fKYWB7iGto3_orUmu1f4FEvw1Q8weId1e62rXXX53p2hQarmVYvkRzRFW0uq0LEhd2J_sIAZsLQGYljZbRnfMPTfiK256qmpDnfcsKUxSboTySLOEGwvNGD4Lyrg_6aujMFSSEi3M0wlcn8R6bMGlYYEN6Fj7q-wXgKFJI9LtztbA96QJF0I5ryqSi2bQLoaA
Content-Length: 3682
Host: localhost:8080

{
  "pin" : "PIN:0000000001",
  "tpn" : "TPN:000000001",
  "attemptTypeName" : "crispr",
  "funderNames" : [ "KOMP" ],
  "workUnitName" : "BCM",
  "workGroupName" : "BaSH",
  "comment" : "New Plan comment",
  "crisprAttempt" : {
    "miDate" : "2019-02-26",
    "experimental" : false,
    "comment" : "New Crispr Comment",
    "mutagenesisExternalRef" : "MF-26326",
    "imitsMiAttemptId" : 20043,
    "attemptExternalRef" : "Attempt external ref",
    "embryoTransferDay" : "Same Day",
    "totalTransferred" : 72,
    "nucleases" : [ {
      "id" : 1,
      "typeName" : "Cas9",
      "concentration" : 250.0,
      "className" : "protein"
    } ],
    "guides" : [ {
      "id" : 1,
      "sequence" : "CTTCACGTACCAAGGAGGGGTGG",
      "guideSequence" : "CTTCACGTACCAAGGAGGGG",
      "pam" : "TGG",
      "chr" : "X",
      "start" : 45334016,
      "stop" : 45334038,
      "strand" : "+",
      "genomeBuild" : "GRCm39",
      "grnaConcentration" : 300.0,
      "truncatedGuide" : true,
      "reversed" : false,
      "sangerService" : false,
      "formatName" : "sgRNA",
      "sourceName" : "commercial",
      "gid" : "GID:00000000001"
    } ],
    "mutagenesisDonors" : [ {
      "id" : 1,
      "concentration" : 5.0,
      "vectorName" : "pUC18_Ikzf2_conditional",
      "oligoSequenceFasta" : "ATAATTGGCAGCCTGATTAGAAGAATGCCCATCTTGTCTAGTGACACATTAGAACAATGAGTAATTGCTCGATGCGGATCCATAACTTCGTATAGCATACATTATACGAAGTTATTCTCTGGGATTAAGAAAAAACTAACATATGAAACAGAAGCCCAGACATCTAAAACCACAAAGA",
      "preparationTypeName" : "Circular"
    } ],
    "reagents" : [ {
      "id" : 1,
      "reagentName" : "Ligase IV",
      "reagentDescription" : "NHEJ Inhibitor",
      "concentration" : 334.0
    } ],
    "genotypePrimers" : [ {
      "id" : 1,
      "genomicStartCoordinate" : 1,
      "genomicEndCoordinate" : 200,
      "name" : "Gpr68wtR",
      "sequence" : "GTAGAGGGACAGGCAGTTGG"
    } ],
    "totalEmbryosInjected" : 10,
    "totalEmbryosSurvived" : 5,
    "embryo2Cell" : "20043",
    "assay" : {
      "id" : 1,
      "typeName" : "T7EN1",
      "numFounderPups" : 26,
      "numFounderSelectedForBreeding" : 1,
      "founderNumAssays" : 26,
      "numDeletionG0Mutants" : 1,
      "numG0WhereMutationDetected" : 1,
      "numHdrG0Mutants" : 1,
      "numHdrG0MutantsAllDonorsInserted" : 0,
      "numHdrG0MutantsSubsetDonorsInserted" : 0,
      "numHrG0Mutants" : 0,
      "numNhejG0Mutants" : 0
    },
    "strainInjectedName" : "C57BL/6NJ"
  },
  "typeName" : "production",
  "statusName" : "Founder Obtained",
  "summaryStatusName" : "Genotype Confirmed",
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001"
    },
    "project" : {
      "href" : "http://localhost:8080/api/projects/TPN:000000001"
    }
  },
  "statusDates" : [ {
    "statusName" : "Plan Created",
    "date" : "2018-01-15T00:00:00.706639"
  }, {
    "statusName" : "Attempt In Progress",
    "date" : "2018-01-16T00:00:00.706639"
  }, {
    "statusName" : "Founder Obtained",
    "date" : "2018-02-22T20:18:00.706639"
  }, {
    "statusName" : "Embryos Obtained",
    "date" : "2018-04-04T14:32:00.706639"
  } ],
  "summaryStatusDates" : [ {
    "statusName" : "Genotype Confirmed",
    "date" : "2019-08-06T20:09:51.706639"
  } ],
  "statusTransition" : {
    "currentStatus" : "Founder Obtained",
    "transitions" : [ {
      "action" : "abortWhenFounderObtained",
      "description" : "Abort the plan after a founder obtained",
      "triggeredByUser" : true,
      "available" : false,
      "note" : "The plan has colonies that are not aborted. Please abort them first",
      "nextStatus" : "Attempt Aborted"
    } ],
    "actionToExecute" : null
  }
}

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 870

{
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001"
    }
  },
  "history" : [ {
    "id" : 1,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:18.393315938",
    "comment" : "Plan updated",
    "details" : [ {
      "field" : "comment",
      "oldValue" : null,
      "newValue" : "New Plan comment",
      "note" : "Field changed"
    }, {
      "field" : "crisprAttempt.comment",
      "oldValue" : "crispr plan comment",
      "newValue" : "New Crispr Comment",
      "note" : "Field changed"
    }, {
      "field" : "crisprAttempt.totalEmbryosInjected",
      "oldValue" : "72",
      "newValue" : "10",
      "note" : "Field changed"
    }, {
      "field" : "crisprAttempt.totalEmbryosSurvived",
      "oldValue" : "70",
      "newValue" : "5",
      "note" : "Field changed"
    } ]
  } ]
}

PUT /api/plans/PIN:0000000010 HTTP/1.1
Content-Type: application/json
Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6ImNxLXJJekZtZGxnR3ZlOG1QeEU1MGciLCJpYXQiOjE3MDg0NDE2MzIsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQzMn0.c3CAyVPJupdpeA2nsXevnycx5NQ6MemJMVF678Ni-acY9kY6XTjNdN85QHJETtA82QB1qtTXKsrQZUwzyqUtECbVLFuT41z5yQOFGBPSCY_yDSBWVxkW_I_uR4zQ3Ick5NL_dg9049q_TSRqCXOrLr276SIvSlVz2ebSiFVBTq3dYbVolB64QGjrninZnpopgl9n2OzJlTA-CUYs6KiakgwJ7S3EtxCAXrWi4762STG6LTmQtbXCfC9T_qV6TostjXiweoONe7sphK3XxyOpGTawuC1NmKw4l1Ga1f0yz-M0hOB_IBU_CbIJLcSqUBb-8F5g3h5BJVXEgpnrYmu90A
Content-Length: 1599
Host: localhost:8080

{
  "pin" : "PIN:0000000010",
  "tpn" : "TPN:000000003",
  "attemptTypeName" : "es cell",
  "funderNames" : [ "KOMP" ],
  "workUnitName" : "BCM",
  "workGroupName" : "BaSH",
  "comment" : "New Plan comment",
  "esCellAttempt" : {
    "esCellName" : "EPD0045_1_A11",
    "miDate" : "2007-04-24",
    "experimental" : false,
    "comment" : "additional information",
    "blastStrainName" : "C57BL/6NJ",
    "totalBlastsInjected" : 44,
    "totalTransferred" : 40,
    "numberSurrogatesReceiving" : 0,
    "totalPupsBorn" : 25,
    "totalFemaleChimeras" : 5,
    "totalMaleChimeras" : 2,
    "totalChimeras" : 7,
    "numberOfMalesWith0To39PercentChimerism" : 1,
    "numberOfMalesWith40To79PercentChimerism" : 1,
    "numberOfMalesWith80To99PercentChimerism" : 0,
    "numberOfMalesWith100PercentChimerism" : 0,
    "testCrossStrainName" : "BALB/cJ",
    "dateChimerasMated" : "2007-06-18",
    "numberOfChimeraMatingsAttempted" : 6,
    "numberOfChimeraMatingsSuccessful" : 5,
    "numberOfChimerasWithGltFromCct" : 1,
    "numberOfChimerasWithGltFromGenotyping" : 1,
    "numberOfChimerasWith0To9PercentGlt" : 0,
    "numberOfChimerasWith10To49PercentGlt" : 1,
    "numberOfChimerasWith50To99PercentGlt" : 0,
    "numberOfChimerasWith100PercentGlt" : 0,
    "totalF1MiceFromMatings" : 32,
    "numberOfCctOffspring" : 3,
    "cassetteTransmissionVerified" : "2007-10-21",
    "numberOfHetOffspring" : 2,
    "numberOfLiveGltOffspring" : 0,
    "imitsMiAttemptId" : 2030,
    "attemptExternalRef" : "MAKE"
  },
  "typeName" : "production",
  "statusTransition" : {
    "actionToExecute" : null
  }
}

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 874

{
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000010"
    }
  },
  "history" : [ {
    "id" : 1,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:13.115514204",
    "comment" : "Plan updated",
    "details" : [ {
      "field" : "comment",
      "oldValue" : null,
      "newValue" : "New Plan comment",
      "note" : "Field changed"
    }, {
      "field" : "esCellAttempt.cassetteTransmissionVerifiedAutoComplete",
      "oldValue" : "false",
      "newValue" : "true",
      "note" : "Field changed"
    }, {
      "field" : "esCellAttempt.totalF1MiceFromMatings",
      "oldValue" : "52",
      "newValue" : "32",
      "note" : "Field changed"
    }, {
      "field" : "esCellAttempt.totalTransferred",
      "oldValue" : "44",
      "newValue" : "40",
      "note" : "Field changed"
    } ]
  } ]
}

PUT /api/plans/PIN:0000000009 HTTP/1.1
Content-Type: application/json
Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6ImtGTDNoUzR0MXRrT3FQMHNaTVN6VXciLCJpYXQiOjE3MDg0NDE2NDEsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ0MX0.gaHUfUSggFtrW2A1Nm6wybIvq8UYb4UKRdsSTSsfeAK7A5rETM5QkyUWMXm5m8u1Z_grVF-WS6jCcR2hOY3z0n306QjSoXgX737dZKPV6xX_ufjbPjZWgjTiBeodfeTt6ASHbY_S55pQcdgkeknqE4gEzO7VnwtuBgKOwYn-pq08ZpmPkmBfWSNs9XUoDaxxqblCiKiz3CUK0R5BHPzByMj93d9Uc3PcP8BNvvNvuGQ8gclYOcTfGZXHF8FbguQotKKZJfcYR-tbWyiVjBWdluxiZAOBKl7cIMPcOX50Xv0BLasALRlRZpZPcaxMteSyOmauxUzQEyofw56TYd9NHg
Content-Length: 951
Host: localhost:8080

{
  "pin" : "PIN:0000000009",
  "tpn" : "TPN:000000003",
  "attemptTypeName" : "es cell allele modification",
  "funderNames" : [ "KOMP" ],
  "workUnitName" : "BCM",
  "workGroupName" : "BaSH",
  "comment" : null,
  "esCellAlleleModificationStartingPoint" : {
    "_links" : {
      "outcome" : {
        "href" : "http://localhost:8080/api/plans/PIN:0000000010/outcomes/TPO:000000000003"
      },
      "productionPlan" : {
        "href" : "http://localhost:8080/api/plans/PIN:0000000010"
      }
    },
    "outcomeTpo" : "TPO:000000000003",
    "productionPlanPin" : "PIN:0000000010"
  },
  "esCellAlleleModificationAttempt" : {
    "modificationExternalRef" : "GSF-EPD0045_1_B11-3-1",
    "numberOfCreMatingsSuccessful" : 3,
    "tatCre" : true,
    "deleterStrainName" : "BALB/cJ",
    "imitsMouseAlleleModId" : 1775,
    "imitsTargRepAlleleId" : 1878
  },
  "typeName" : "production",
  "statusTransition" : {
    "actionToExecute" : null
  }
}

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 609

{
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000009"
    }
  },
  "history" : [ {
    "id" : 1,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:21.866851975",
    "comment" : "Plan updated",
    "details" : [ {
      "field" : "esCellAlleleModificationAttempt.numberOfCreMatingsSuccessful",
      "oldValue" : "1",
      "newValue" : "3",
      "note" : "Field changed"
    }, {
      "field" : "esCellAlleleModificationAttempt.tatCre",
      "oldValue" : "false",
      "newValue" : "true",
      "note" : "Field changed"
    } ]
  } ]
}

PUT /api/plans/PIN:0000000003 HTTP/1.1
Content-Type: application/json
Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6ImpGNG5lR25qbmMwU2dXbjNwM1pIMXciLCJpYXQiOjE3MDg0NDE2MzksInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQzOX0.baE-Z2mIuJhseUDcBPMKpUSna_7SbfL3r5Fo_pI3Go8j3jPxcytbMwl9y5rqBUiGw4xOqvqhmKZwUhoYIzXyMb7dJtspZfRe2zdazIwnmPcVAFt9_sPNOSTRfW4S1nCa9y7T4z8z-LXP5Jzyzb5oA4gJpsiAdWhHisC0g63F7qXFYWZwfle8SzLPIF_VenmlBLElocGCDVVgOguK5nNuyQiNc3Ft77QcZQ_gsaf9ZbYcvB9BRg_BFu-VqoSOJloQ3tVQLLV66NxuuuVZH0XRyhH1pBlo67JvSuECto9QHyd-WiYcevKx0cqd_4OtKlv370HH9VqiiBG2zwde3WonQA
Content-Length: 494
Host: localhost:8080

{
  "pin" : "PIN:0000000003",
  "tpn" : "TPN:000000001",
  "attemptTypeName" : "adult and embryo phenotyping",
  "funderNames" : [ "KOMP" ],
  "workUnitName" : "BCM",
  "workGroupName" : "BaSH",
  "comment" : "New Plan comment",
  "typeName" : "phenotyping",
  "phenotypingExternalRef" : "CR10129",
  "doNotCountTowardsCompleteness" : false,
  "phenotypingBackgroundStrainName" : "C57BL/6NJ",
  "cohortProductionWorkUnitName" : "BCM",
  "statusTransition" : {
    "actionToExecute" : null
  }
}

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 419

{
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000003"
    }
  },
  "history" : [ {
    "id" : 1,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:19.929475159",
    "comment" : "Plan updated",
    "details" : [ {
      "field" : "comment",
      "oldValue" : null,
      "newValue" : "New Plan comment",
      "note" : "Field changed"
    } ]
  } ]
}

$ curl 'http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000001' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IlF1UGp2N0t2aFZ4b1NaRThGdTlQc0EiLCJpYXQiOjE3MDg0NDE2NTcsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1N30.eUmzUaNYmDp-2tDqNzf_IYG45vCwTlX61mRPlXzPhwXSKSuc013OSbAJ40ddddRRrhaz1y82KtQiECumi2VBa9Ok6nKmFwgbq02XtOzWjXaWMTxFW7YUsZLpymonvHMG6pGUBmUN3DqZ6-hvxz4anFzTtqMvXYB27ZFSo5DsmIhmQM-Cv1p-9OB0gbGD0D5pE7MUvX2bLvD4IQR_brWdVTtQKLgI0sT4eLkPuW0umKPv0RYAOEo2nuuj0PI0LUWw1ge8SHtp7SE8ST4R5US8cXS-l5WNf9hPTNihxXzttLB8ttlCrh-8ucIPUti7hew6F0D5vhl5FUuKxKqB1uy38w'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 1930

{
  "pin" : "PIN:0000000001",
  "tpo" : "TPO:000000000001",
  "outcomeTypeName" : "Colony",
  "colony" : {
    "name" : "jr34293",
    "genotypingComment" : "An example comment for the genotyping.",
    "statusName" : "Genotype In Progress",
    "statusDates" : [ {
      "statusName" : "Genotype In Progress",
      "date" : "2019-08-06T20:09:51.896778"
    } ],
    "backgroundStrainName" : "C57BL/6NJ",
    "distributionProducts" : [ {
      "id" : 1,
      "distributionCentreName" : "BCM",
      "productTypeName" : "Live mice",
      "distributionNetworkName" : "MMRRC",
      "startDate" : "2018-04-19",
      "endDate" : "2018-11-09",
      "distributionIdentifier" : "11"
    } ],
    "statusTransition" : {
      "currentStatus" : "Genotype In Progress",
      "transitions" : [ {
        "action" : "confirmGenotypeWhenInProgress",
        "description" : "Confirm Genotype when Genotype In Progress",
        "triggeredByUser" : true,
        "available" : true,
        "note" : null,
        "nextStatus" : "Genotype Confirmed"
      }, {
        "action" : "updateFromGenotypeInProgressToGenotypeNotConfirmed",
        "description" : "Update from Genotype In Progress to Genotype Not Confirmed",
        "triggeredByUser" : true,
        "available" : true,
        "note" : null,
        "nextStatus" : "Genotype Not Confirmed"
      }, {
        "action" : "abortGenotypeInProgress",
        "description" : "Abort a colony that is Genotype In Progress",
        "triggeredByUser" : true,
        "available" : true,
        "note" : null,
        "nextStatus" : "Colony Aborted"
      } ],
      "actionToExecute" : null
    }
  },
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000001"
    },
    "mutations" : [ {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000001/mutations/MIN:000000000001"
    } ]
  }
}

$ curl 'http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000004' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IjVzZFZwZXNoZW1MSm1WRFVlNDh6TFEiLCJpYXQiOjE3MDg0NDE2NTYsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1Nn0.XANxi7vFEmMn-3J5zp_8atssSBrBNsg_Zl2KOJAFBfHFQ3-WXHF-U3QjGh3HILEpIBT6BCovZb6Vl9MasgtD3u_CtSjnHWWZx1Zirf8xP2aTdD5lKRV4dGFwtcvTEaGELAfN7m_qRmYxCHQiFYcbgOtEj0-y5Y-USSAp7atqPvytWBbgxLrlzd4lW3OWvDyT92QBmfTkZnS_966uWJduUynq_DZQSOdOtcMJhDpefAUFlzMGwubbpHYOG8DldrEonV_5YvsELhn8KQgLgb9Al9Vdryp6DqpWRVICX--OukstMy7jLOu009qiInjQtegSm5WwYjLT4cxSI2HoC8MTUw'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 1258

{
  "pin" : "PIN:0000000001",
  "tpo" : "TPO:000000000004",
  "outcomeTypeName" : "Specimen",
  "specimen" : {
    "specimenExternalRef" : "External reference",
    "specimenTypeName" : "haplo-essential",
    "statusName" : "Specimen Group In Progress",
    "statusDates" : [ {
      "statusName" : "Specimen Group In Progress",
      "date" : "2019-08-06T20:09:51.896778"
    } ],
    "backgroundStrainName" : "C57BL/6NJ",
    "specimenProperties" : [ {
      "id" : 1,
      "propertyTypeName" : "Property 1",
      "value" : "Value 1"
    } ],
    "statusTransition" : {
      "currentStatus" : "Specimen Group In Progress",
      "transitions" : [ {
        "action" : "abortSpecimenGroup",
        "description" : "Abort a specimen group",
        "triggeredByUser" : true,
        "available" : false,
        "note" : "Specimen cannot be aborted [Not implemented yet.]",
        "nextStatus" : "Specimen Group Aborted"
      } ],
      "actionToExecute" : null
    }
  },
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000004"
    },
    "mutations" : [ {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000004/mutations/MIN:000000000001"
    } ]
  }
}

$ curl 'http://localhost:8080/api/plans/PIN:0000000001/outcomes' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6Ing3RTNMY29SbllQM0c4UDFXUlJJUmciLCJpYXQiOjE3MDg0NDE2NTUsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1NX0.mEEMr7lFB5P5DjgLi6XAnY-wyKQ8aAS1Z90tU1g9XjeCo29tMN4Dsa7iS_PGowsdNPd9VymejevTKZ0sOVBUNwhvdW_izgRGR7Ltt5FxXKAFRZDFCQtoDbVKI449zKauArq5FbkNaKjok2Ouohf6_oVCBQngsYS7lhrBj_ATH5DAWMSbxX2AG9lTaJ3WqqxGzBGajM-GSU_l5BF6fYvrah2FpycpyhPTuqoFPOmhmJXCbpqYJTM98xGrSPL_ALqZf04bJrC32M4QCSHIEi5Sv2wwreZ2-dy8V7n9xlTeLR_u-sgCc-SmklPULBzGjJQ3VSEA7y7NMNpTHvnfn7K4Kg'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 4406

{
  "_embedded" : {
    "outcomes" : [ {
      "pin" : "PIN:0000000001",
      "tpo" : "TPO:000000000004",
      "outcomeTypeName" : "Specimen",
      "specimen" : {
        "specimenExternalRef" : "External reference",
        "specimenTypeName" : "haplo-essential",
        "statusName" : "Specimen Group In Progress",
        "statusDates" : [ {
          "statusName" : "Specimen Group In Progress",
          "date" : "2019-08-06T20:09:51.896778"
        } ],
        "backgroundStrainName" : "C57BL/6NJ",
        "specimenProperties" : [ {
          "id" : 1,
          "propertyTypeName" : "Property 1",
          "value" : "Value 1"
        } ],
        "statusTransition" : {
          "currentStatus" : "Specimen Group In Progress",
          "transitions" : [ {
            "action" : "abortSpecimenGroup",
            "description" : "Abort a specimen group",
            "triggeredByUser" : true,
            "available" : false,
            "note" : "Specimen cannot be aborted [Not implemented yet.]",
            "nextStatus" : "Specimen Group Aborted"
          } ],
          "actionToExecute" : null
        }
      },
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000004"
        },
        "mutations" : [ {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000004/mutations/MIN:000000000001"
        } ]
      }
    }, {
      "pin" : "PIN:0000000001",
      "tpo" : "TPO:000000000001",
      "outcomeTypeName" : "Colony",
      "colony" : {
        "name" : "jr34293",
        "genotypingComment" : "An example comment for the genotyping.",
        "statusName" : "Genotype In Progress",
        "statusDates" : [ {
          "statusName" : "Genotype In Progress",
          "date" : "2019-08-06T20:09:51.896778"
        } ],
        "backgroundStrainName" : "C57BL/6NJ",
        "distributionProducts" : [ {
          "id" : 1,
          "distributionCentreName" : "BCM",
          "productTypeName" : "Live mice",
          "distributionNetworkName" : "MMRRC",
          "startDate" : "2018-04-19",
          "endDate" : "2018-11-09",
          "distributionIdentifier" : "11"
        } ],
        "statusTransition" : {
          "currentStatus" : "Genotype In Progress",
          "transitions" : [ {
            "action" : "confirmGenotypeWhenInProgress",
            "description" : "Confirm Genotype when Genotype In Progress",
            "triggeredByUser" : true,
            "available" : true,
            "note" : null,
            "nextStatus" : "Genotype Confirmed"
          }, {
            "action" : "updateFromGenotypeInProgressToGenotypeNotConfirmed",
            "description" : "Update from Genotype In Progress to Genotype Not Confirmed",
            "triggeredByUser" : true,
            "available" : true,
            "note" : null,
            "nextStatus" : "Genotype Not Confirmed"
          }, {
            "action" : "abortGenotypeInProgress",
            "description" : "Abort a colony that is Genotype In Progress",
            "triggeredByUser" : true,
            "available" : true,
            "note" : null,
            "nextStatus" : "Colony Aborted"
          } ],
          "actionToExecute" : null
        }
      },
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000001"
        },
        "mutations" : [ {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000001/mutations/MIN:000000000001"
        } ]
      }
    }, {
      "pin" : "PIN:0000000001",
      "tpo" : "TPO:000000000002",
      "outcomeTypeName" : "Colony",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000002"
        }
      }
    }, {
      "pin" : "PIN:0000000001",
      "tpo" : "TPO:000000000003",
      "outcomeTypeName" : "Specimen",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000003"
        }
      }
    }, {
      "pin" : "PIN:0000000001",
      "tpo" : "TPO:000000000005",
      "outcomeTypeName" : "Colony",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000005"
        }
      }
    } ]
  }
}

$ curl 'http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000002/history' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IkdVc3Z4OF9yMzVnTXVrZGMtaXZxVnciLCJpYXQiOjE3MDg0NDE2NTYsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1Nn0.ViEbOW8H936oO8FIsjoWyxffSBxzI4omNubeV3AvozJqkdSNgssww8DfEUGZOESFU0MBMAs-E8mv1iZI7xn1z6w0Ov4dMrwffj4BupczSOVhY5PGLK1-S_XvIC73WR9ENMCyLwgTOpV5i_CkV1h0vf10cF60rVgk262i0XIMFw2BSpRZa2O4prwsxVVzUmP1Qu4OrRuGe_qka7V2YbRLm1DtwCP1CxpV-XRK8TJsjo7P6RfOoNeplrTEevrC85ZKRc3Yo4--lNzyLKiJ2XGzK-sPoIXXjU-HbZw7qSoy9gvSVhh2iYBYcJhyVKofxXcQjtq1fZ2BFhEkuwWiR3CurA'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/json
Content-Length: 307

[ {
  "id" : 1,
  "user" : "gentar_test_user1@gentar.org",
  "date" : "2020-06-17T15:08:56.643268",
  "comment" : "Outcome updated",
  "details" : [ {
    "field" : "colony.genotypingComment",
    "oldValue" : "Comment version 1",
    "newValue" : "Comment version 2",
    "note" : "Field changed"
  } ]
} ]

PUT /api/plans/PIN:0000000001/outcomes/TPO:000000000001 HTTP/1.1
Content-Type: application/json
Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6ImFDRmQ5VVlLMVNLZDVqZm9BUDUyRlEiLCJpYXQiOjE3MDg0NDE2NTUsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1NX0.cFw3KPaE-pXRIes_g2jqBc1a9xTvboEbownyUP35frJ-eA-SS5RtV79py5CXdUkLJwc9hQ4XVOqTbaT7KUTbO9yx6rcVyrQphJp3xxxDrt0-hTYFWb6Y5lzLhaTeGv0sOTneemjWYcGeLD-75W-iLWJaPRgif1iATQfnTXa7iR6Tz-Xzl-BThAOUOBvRQJegn5i0xq7jdnlznFjW7sd1BROXC0YOCRGEEmr0SlzOEEKawhpcyNeg7MQCHtGhshRXhDzm89Quo-xhgpu13JnEtWfmfgyEVwORxzxSWim_ZkAh1BUF8ZKCGTp0bw4iefDKLOBAeaP8XiQRGzIf7o1pSA
Content-Length: 573
Host: localhost:8080

{
  "tpo" : "TPO:000000000001",
  "outcomeTypeName" : "Colony",
  "colony" : {
    "name" : "jr34293",
    "genotypingComment" : "Genotyping comment changed.",
    "backgroundStrainName" : "C57BL/6NJ",
    "distributionProducts" : [ {
      "id" : 1,
      "distributionCentreName" : "BCM",
      "productTypeName" : "Live mice",
      "distributionNetworkName" : "MMRRC",
      "endDate" : "2018-11-09T00:00:00",
      "startDate" : "2018-04-19T00:00:00",
      "distributionIdentifier" : "11"
    } ],
    "statusTransition" : {
      "actionToExecute" : null
    }
  }
}

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 512

{
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000001"
    }
  },
  "history" : [ {
    "id" : 1,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:36.075296519",
    "comment" : "Outcome updated",
    "details" : [ {
      "field" : "colony.genotypingComment",
      "oldValue" : "An example comment for the genotyping.",
      "newValue" : "Genotyping comment changed.",
      "note" : "Field changed"
    } ]
  } ]
}

$ curl 'http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000002/mutations/MIN:000000000002' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IlJGZURONmRldUVXQ2xPQlJ3N3JLblEiLCJpYXQiOjE3MDg0NDE2NTgsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1OH0.NYxrWVkOhvKDqw1vnIn4VpJIiP4XP5-ZNjDYuQ__6StMQp6Aa9HOg6-ZuladIRAdRanfZdLVCb1Wka5qJdk7DMaAGkxmBw86sMfMYcr5DNxIY8aOEjAL0T1qPrybrPqJqg0cvxz2Gvq7DfdNtNZg_fY6wZcZGgHT1Djn35_8JgFOnAs51UAYZiu_tVE_4og0oMWbU0DgQCQJpT654fdAYMXSXuhsB9y83UA5UVcAIusRVatZj9SatXgqMxje2VY7rZB6CwycqDffOfptG97wig8LEIgGIe3nf6ADyHYLG3cRBFKnCpWtG-5nKAEOYm_joOFn-D2jAWBbUlFetqe0hw'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 1504

{
  "id" : 2,
  "min" : "MIN:000000000002",
  "mgiAlleleId" : "MGI:6342258",
  "mgiAlleleSymbolWithoutImpcAbbreviation" : false,
  "symbol" : "em1(IMPC)J",
  "description" : "",
  "qcNote" : "",
  "mgiAlleleSymbolRequiresConstruction" : true,
  "geneticMutationTypeName" : "Not Tested",
  "molecularMutationTypeName" : "Deletion",
  "mutationQcResults" : [ {
    "id" : 1,
    "qcTypeName" : "mutant_specific_sr_pcr",
    "statusName" : "pass"
  } ],
  "mutationSequences" : [ {
    "id" : 2,
    "index" : 1,
    "sequence" : {
      "id" : 1,
      "sequence" : ">Otog TGGGACTAGGTCACAGACAGAAAAAGGGGGATGAGAAGGCCTTAGATCTAAGGGAGGTAAAGAGAGAATTAACCACAGGAATTAGCACACTGAAGGATCGTGCTCGCCAGACCTCAAACCATCTCCTTCTTGCGTCATGAGAAAGCCTTGACCCATCATTTTCCAGTTTTCTGTGTTCTTGCCCCACTTTGGCCCCTGGATCCTGGGATCTCCCCAGAAATTCTTACCTAGCCCC",
      "typeName" : "complete",
      "categoryName" : "outcome sequence"
    }
  } ],
  "mutationCategorizations" : [ {
    "name" : "NHEJ",
    "description" : "non-homology end-joining",
    "typeName" : "repair_mechanism"
  } ],
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/mutations/MIN:000000000002"
    },
    "outcomes" : [ {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000002"
    } ]
  },
  "genes" : [ {
    "id" : 2,
    "symbol" : "Otog",
    "speciesName" : "Mus musculus",
    "accessionId" : "MGI:1202064",
    "name" : "otogelin",
    "externalLink" : "http://www.mousephenotype.org/data/genes/MGI:1202064"
  } ]
}

$ curl 'http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000002/mutations/MIN:000000000002/history' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6Imw3cTdocThxOFp0NmFvaWZGRF9hY3ciLCJpYXQiOjE3MDg0NDE2NTksInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1OX0.eqewfB1Jh5aKnr7QIarMQ7zNud62hdVAt-w4BJacAMdayN3Ovrv01pAi1gHhf_qMAj6rNcVY48lHrIpJB5U26TnCBVWL6t3R7_eGxSQguJ88H8Kgb0YC_CBDGvPYYj2qZH4waXjBkhDRc8OFplfnl4qe-B7LrbTj5O2FRHlV04xLXPe77bLVo0yR3mZtNYhSdZ4vf1AHHeF4mUeyRhzWV9gjGaDmxlRdJioWPrMj9PBTwf5UkmxEkxfy0XXxJFUtvJK4mrlkRpU37QzUlh7GVHcN50jl0dhiy8Ux2P7RAN31iEyag9kX0wME8qsI5SKmuiY6wwnspVEZxdWlSEi4oA'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/json
Content-Length: 290

[ {
  "id" : 1,
  "user" : "gentar_test_user1@gentar.org",
  "date" : "2020-06-17T15:08:56.643268",
  "comment" : "Mutation updated",
  "details" : [ {
    "field" : "geneticMutationTypeName",
    "oldValue" : "Dominant",
    "newValue" : "Recessive",
    "note" : "Field changed"
  } ]
} ]

$ curl 'http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000002/mutations/MIN:000000000002/' -i -X PUT \
    -H 'Content-Type: application/json' \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6Ik9HTmx3Q2pUclE5RWZCeVBVazh6QVEiLCJpYXQiOjE3MDg0NDE2NTksInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1OX0.SrGGg-cpy8a1CPbM_eNfftlfDMtsIqHmx384ekqPrtbrHuRggLTLsR6LGWuwLY6lGWHqHNo6BinWypsijAFa0cXmMsLYcuXUiOeVLpsFGgIbUGLq05XVBbIMFNbKdtW3X1sVJ59fGN_D7-BJl4KWBWmw8aV9peyQQ-_VC5_iTsan1xvdFu1EyuZ_hRwy3H3JIY0yOla5bPs_lQOBdYAf-gAWgV3bqllxR0yiRE6zuaR4jGKswd6pzhSEN_rMNO3EW9-SrpaCDw-CkKJ5ZygP4W6zpv2uJ6Bvm7IAGV99fOEPZkWw9_YLRk3i5C1tE0etaQAQQOiiXnWupVeaoP8Bdg' \
    -d '{
  "min" : "MIN:000000000002",
  "mgiAlleleId" : "MGI:6342258",
  "symbol" : "Otog<em1(IMPC)Bcm>",
  "mgiAlleleSymbolWithoutImpcAbbreviation" : false,
  "mgiAlleleSymbolRequiresConstruction" : true,
  "geneticMutationTypeName" : "Null",
  "molecularMutationTypeName" : "Point Mutation",
  "mutationQcResults" : [ {
    "id" : 1,
    "qcTypeName" : "mutant_specific_sr_pcr",
    "statusName" : "pass"
  }, {
    "id" : null,
    "qcTypeName" : "loxp_screen",
    "statusName" : "fail"
  } ],
  "mutationSequences" : [ {
    "id" : 2,
    "index" : 1,
    "sequence" : {
      "id" : 1,
      "sequence" : ">Otog \nTGGGACTAGGTCACAGACAGAAAAAGGGGGATGAGAAGGCCTTAGATCTAAGGGAGGTAAAGAGAGAATTAACCACAGGAATTAGCACACTGAAGGATCGTGCTCGCCAGACCTCAAACCATCTCCTTCTTGCGTCATGAGAAAGCCTTGACCCATCATTTTCCAGTTTTCTGTGTTCTTGCCCCACTTTGGCCCCTGGATCCTGGGATCTCCCCAGAAATTCTTACCTAGCCCC",
      "typeName" : "complete",
      "categoryName" : "outcome sequence"
    }
  } ],
  "description" : "Otog<em1(IMPC)Bcm>:\\r\\nThis allele was generated at The Jackson Laboratory by electroporating Cas9 protein and 2 guide sequences CTTCACGTACCAAGGAGGGG and TCTTGCTTCCTACTTCCAGT, which resulted in a 520 bp deletion beginning at Chromosome 7 position 46,245,130 bp and ending after 46,245,649 bp (GRCm38/mm10). This mutation deletes ENSMUSE00000204147 (exon 4) and 444 bp of flanking intronic sequence including the splice acceptor and donor and is predicted to cause a change of amino acid sequence after residue 71 and early truncation 34 amino acids later. \\r\\n\\r\\n\\r\\n",
  "qcNote" : "",
  "mutationCategorizations" : [ {
    "name" : "NHEJ",
    "description" : "non-homology end-joining",
    "typeName" : "repair_mechanism"
  }, {
    "name" : "HR",
    "typeName" : "repair_mechanism"
  } ],
  "_links" : {
    "outcomes" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000002"
    }
  },
  "genes" : [ {
    "symbol" : "Otog"
  } ]
}'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 4236

{
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001/outcomes/TPO:000000000002/mutations/MIN:000000000002"
    }
  },
  "history" : [ {
    "id" : 1,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:40.051579146",
    "comment" : "Mutation updated",
    "details" : [ {
      "field" : "description",
      "oldValue" : "",
      "newValue" : "Otog<em1(IMPC)Bcm>:\\r\\nThis allele was generated at The Jackson Laboratory by electroporating Cas9 protein and 2 guide sequences CTTCACGTACCAAGGAGGGG and TCTTGCTTCCTACTTCCAGT, which resulted in a 520 bp deletion beginning at Chromosome 7 position 46,245,130 bp and ending after 46,245,649 bp (GRCm38/mm10). This mutation deletes ENSMUSE00000204147 (exon 4) and 444 bp of flanking intronic sequence including the splice acceptor and donor and is predicted to cause a change of amino acid sequence after residue 71 and early truncation 34 amino acids later. \\r\\n\\r\\n\\r\\n",
      "note" : "Field changed"
    }, {
      "field" : "geneticMutationType.name",
      "oldValue" : "Not Tested",
      "newValue" : "Null",
      "note" : "Field changed"
    }, {
      "field" : "molecularMutationType.name",
      "oldValue" : "Deletion",
      "newValue" : "Point Mutation",
      "note" : "Field changed"
    }, {
      "field" : "mutationCategorizations.[9]",
      "oldValue" : null,
      "newValue" : "id:9, name:HR, description: null, mutationCategorizationTypeName:repair_mechanism",
      "note" : "Element added"
    }, {
      "field" : "mutationCategorizations.[9].mutationCategorizationType.name",
      "oldValue" : null,
      "newValue" : "repair_mechanism",
      "note" : "Field changed"
    }, {
      "field" : "mutationCategorizations.[9].name",
      "oldValue" : null,
      "newValue" : "HR",
      "note" : "Field changed"
    }, {
      "field" : "mutationQcResults.[id:null, QC type name:loxp_screen, QC status:fail]",
      "oldValue" : null,
      "newValue" : "id:null, QC type name:loxp_screen, QC status:fail",
      "note" : "Element added"
    }, {
      "field" : "mutationQcResults.[id:null, QC type name:loxp_screen, QC status:fail].qcType.name",
      "oldValue" : null,
      "newValue" : "loxp_screen",
      "note" : "Field changed"
    }, {
      "field" : "mutationQcResults.[id:null, QC type name:loxp_screen, QC status:fail].status.name",
      "oldValue" : null,
      "newValue" : "fail",
      "note" : "Field changed"
    }, {
      "field" : "mutationSequences.[2]",
      "oldValue" : "MutationSequence(id=2, sequence=Sequence(id=1, sequence=>Otog TGGGACTAGGTCACAGACAGAAAAAGGGGGATGAGAAGGCCTTAGATCTAAGGGAGGTAAAGAGAGAATTAACCACAGGAATTAGCACACTGAAGGATCGTGCTCGCCAGACCTCAAACCATCTCCTTCTTGCGTCATGAGAAAGCCTTGACCCATCATTTTCCAGTTTTCTGTGTTCTTGCCCCACTTTGGCCCCTGGATCCTGGGATCTCCCCAGAAATTCTTACCTAGCCCC, sequenceType=SequenceType(id=1, name=complete), sequenceCategory=SequenceCategory(id=3, name=outcome sequence)), index=1)",
      "newValue" : "MutationSequence(id=2, sequence=Sequence(id=1, sequence=>Otog \nTGGGACTAGGTCACAGACAGAAAAAGGGGGATGAGAAGGCCTTAGATCTAAGGGAGGTAAAGAGAGAATTAACCACAGGAATTAGCACACTGAAGGATCGTGCTCGCCAGACCTCAAACCATCTCCTTCTTGCGTCATGAGAAAGCCTTGACCCATCATTTTCCAGTTTTCTGTGTTCTTGCCCCACTTTGGCCCCTGGATCCTGGGATCTCCCCAGAAATTCTTACCTAGCCCC, sequenceType=SequenceType(id=1, name=complete), sequenceCategory=SequenceCategory(id=3, name=outcome sequence)), index=1)",
      "note" : "Element changed"
    }, {
      "field" : "mutationSequences.[2].sequence.sequence",
      "oldValue" : ">Otog TGGGACTAGGTCACAGACAGAAAAAGGGGGATGAGAAGGCCTTAGATCTAAGGGAGGTAAAGAGAGAATTAACCACAGGAATTAGCACACTGAAGGATCGTGCTCGCCAGACCTCAAACCATCTCCTTCTTGCGTCATGAGAAAGCCTTGACCCATCATTTTCCAGTTTTCTGTGTTCTTGCCCCACTTTGGCCCCTGGATCCTGGGATCTCCCCAGAAATTCTTACCTAGCCCC",
      "newValue" : ">Otog \nTGGGACTAGGTCACAGACAGAAAAAGGGGGATGAGAAGGCCTTAGATCTAAGGGAGGTAAAGAGAGAATTAACCACAGGAATTAGCACACTGAAGGATCGTGCTCGCCAGACCTCAAACCATCTCCTTCTTGCGTCATGAGAAAGCCTTGACCCATCATTTTCCAGTTTTCTGTGTTCTTGCCCCACTTTGGCCCCTGGATCCTGGGATCTCCCCAGAAATTCTTACCTAGCCCC",
      "note" : "Field changed"
    }, {
      "field" : "symbol",
      "oldValue" : "em1(IMPC)J",
      "newValue" : "Otog<em1(IMPC)Bcm>",
      "note" : "Field changed"
    } ]
  } ]
}

$ curl 'http://localhost:8080/api/plans/PIN:0000000001/phenotypingStages/PSN:000000000001' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IksxRllONE10OFZkakZiUlJoVTBCdFEiLCJpYXQiOjE3MDg0NDE2NDgsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ0OH0.lqrXipj1t8XGNA_UwvMQ6FIvgq3T8tW0H630R13UR34aM6UXAgEX5y8rb3_ulOR8ZSiAXiQ8ReKBUVt_v1ICXvJciU9TzAUh76wbs0BHux2MR_7RPvfiewVojYb-nT1lVvAp7njtuKqZUxroTuku_ypmpQ9ewYW8VAHY9PV3NfzvcolpztKRF1zcyppkaTYnt9m5coL-Prd55oQ3KbDkJPWhXa68W1SDI9gbk-ilDUMG3_8PBlTAnODH1WtOo4Z1BoCj2v8xrm7PqAxbPI-uvqf4s79RSzNuR1OCYuR4UMhZnxs4vSYiELq-olNpFoUCbDMf_dqBZI_-VaehXUfkmA'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 1714

{
  "pin" : "PIN:0000000001",
  "psn" : "PSN:000000000001",
  "statusName" : "Phenotyping Started",
  "phenotypingTypeName" : "early adult and embryo",
  "phenotypingExternalRef" : "CR10129",
  "phenotypingExperimentsStarted" : "2020-02-24",
  "initialDataReleaseDate" : "2015-11-23",
  "tissueDistributions" : [ {
    "id" : 1,
    "startDate" : "2020-04-13",
    "endDate" : "2021-05-15",
    "workUnitName" : "TCP",
    "materialDepositedTypeName" : "Paraffin-embedded Sections"
  } ],
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001/phenotypingStages/PSN:000000000001"
    },
    "plan" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001"
    }
  },
  "statusDates" : [ {
    "statusName" : "Phenotyping Registered",
    "date" : "2019-11-01T00:00:00"
  }, {
    "statusName" : "Phenotyping Started",
    "date" : "2019-11-02T00:00:00"
  } ],
  "statusTransition" : {
    "currentStatus" : "Phenotyping Started",
    "transitions" : [ {
      "action" : "updateToPhenotypingAllDataSent",
      "description" : "No more phenotype data will be sent to the DCC.",
      "triggeredByUser" : true,
      "available" : true,
      "note" : "Used to indicate all phenotype data has been sent to the DCC.",
      "nextStatus" : "Phenotyping All Data Sent"
    }, {
      "action" : "rollbackPhenotypingStarted",
      "description" : "Rollback the state of phenotyping marked as having phenotyping started.",
      "triggeredByUser" : true,
      "available" : false,
      "note" : "The current user does not have permission to rollback to 'Phenotyping Registered'",
      "nextStatus" : "Phenotyping Registered"
    } ],
    "actionToExecute" : null
  }
}

$ curl 'http://localhost:8080/api/plans/PIN:0000000001/phenotypingStages' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IlFUMzVYbDhTWDltU2V3TXZ6U3JWd1EiLCJpYXQiOjE3MDg0NDE2NDgsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ0OH0.BsvZjWRVhQUEFjQQgZSIBzZur8uoGqUbfXRqzirZExEMpYHq2TI7Sulwz7bqNXYRlahKnrWW8a2_PezvpUy93FuK0S7vsVZnMuciCMW0y79Q1mL17PZEw2Z6nkP4GhtWxvroVFbTp6z_x1Xp4hljHsmNuCUJF-o7qH2F5zrFGl397yZjovLSV1lUfgMwOnPNLGujrGbT5Tfa99jPqXjXvt5vWbk2KApc1q2EK4ct47Z1hhqoQ9IOoQdIRHFSHH-OGLSccsZ3ZqBgptdOG042H0DFJqFCGHqA5asIoHLAYWN4TlP8PqvJ_CV2LTg6LTUi1oCh13U9mR0SSN6oIanxXA'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 4057

{
  "_embedded" : {
    "phenotypingStages" : [ {
      "pin" : "PIN:0000000001",
      "psn" : "PSN:000000000001",
      "statusName" : "Phenotyping Started",
      "phenotypingTypeName" : "early adult and embryo",
      "phenotypingExternalRef" : "CR10129",
      "phenotypingExperimentsStarted" : "2020-02-24",
      "initialDataReleaseDate" : "2015-11-23",
      "tissueDistributions" : [ {
        "id" : 1,
        "startDate" : "2020-04-13",
        "endDate" : "2021-05-15",
        "workUnitName" : "TCP",
        "materialDepositedTypeName" : "Paraffin-embedded Sections"
      } ],
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001/phenotypingStages/PSN:000000000001"
        },
        "plan" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001"
        }
      },
      "statusDates" : [ {
        "statusName" : "Phenotyping Registered",
        "date" : "2019-11-01T00:00:00"
      }, {
        "statusName" : "Phenotyping Started",
        "date" : "2019-11-02T00:00:00"
      } ],
      "statusTransition" : {
        "currentStatus" : "Phenotyping Started",
        "transitions" : [ {
          "action" : "updateToPhenotypingAllDataSent",
          "description" : "No more phenotype data will be sent to the DCC.",
          "triggeredByUser" : true,
          "available" : true,
          "note" : "Used to indicate all phenotype data has been sent to the DCC.",
          "nextStatus" : "Phenotyping All Data Sent"
        }, {
          "action" : "rollbackPhenotypingStarted",
          "description" : "Rollback the state of phenotyping marked as having phenotyping started.",
          "triggeredByUser" : true,
          "available" : false,
          "note" : "The current user does not have permission to rollback to 'Phenotyping Registered'",
          "nextStatus" : "Phenotyping Registered"
        } ],
        "actionToExecute" : null
      }
    }, {
      "pin" : "PIN:0000000001",
      "psn" : "PSN:000000000002",
      "statusName" : "Late Adult Phenotyping Registered",
      "phenotypingTypeName" : "late adult",
      "phenotypingExternalRef" : "CR10129",
      "phenotypingExperimentsStarted" : "2018-09-17",
      "initialDataReleaseDate" : "2019-04-12",
      "tissueDistributions" : [ {
        "id" : 2,
        "startDate" : "2019-04-13",
        "endDate" : "2020-05-15",
        "workUnitName" : "UCD",
        "materialDepositedTypeName" : "Fixed Tissue"
      } ],
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001/phenotypingStages/PSN:000000000002"
        },
        "plan" : {
          "href" : "http://localhost:8080/api/plans/PIN:0000000001"
        }
      },
      "statusDates" : [ {
        "statusName" : "Late Adult Phenotyping Registered",
        "date" : "2018-09-27T00:00:00"
      } ],
      "statusTransition" : {
        "currentStatus" : "Late Adult Phenotyping Registered",
        "transitions" : [ {
          "action" : "updateToRederivationStarted",
          "description" : "Started rederivation of the colony for phenotyping",
          "triggeredByUser" : true,
          "available" : true,
          "note" : "executed by the user when rederivation is started.",
          "nextStatus" : "Rederivation Started"
        }, {
          "action" : "updateToPhenotypingStarted",
          "description" : "Marked as started when the DCC receives phenotype data",
          "triggeredByUser" : true,
          "available" : false,
          "note" : "The current user does not have permission to move to 'Phenotyping Started'",
          "nextStatus" : "Phenotyping Started"
        }, {
          "action" : "abortWhenPhenotypeRegistered",
          "description" : "Abort phenotyping when a phenotype attempt has been registered",
          "triggeredByUser" : true,
          "available" : true,
          "note" : null,
          "nextStatus" : "Phenotype Production Aborted"
        } ],
        "actionToExecute" : null
      }
    } ]
  }
}

$ curl 'http://localhost:8080/api/plans/PIN:0000000001/phenotypingStages/PSN:000000000002/history' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6ImJ3anRTUHB6eERRVG1VcXVia1NhRkEiLCJpYXQiOjE3MDg0NDE2NDksInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ0OX0.C1bKUZYs5_iIdCvl14yVRZW8TgcQgo0tML29OmJiTioWTiMBIc9uXA3iNP5hBclLJ_rPg3kvq10jm_1mBbDkc8kpnp15FWrRqvULxOJXJlBtCGu7i-mi_xDpGICeKYDCdKCgZdUcgZh8cbz22cOW5g_A9u3kZxogQLnTfCghqg5DrEIAH5vdtjL8b4_8EjK8X3mangwapagr5qARSoDqVgWNqvE-irfc1w36vn0M8BiHy6VoA5s2AH9_LPqKzww1dPJgV8R4JWwmiWXd2chPNB8u6c6Ubs95v9GTkwzF5dlDmgMmRSc5UtOBOBX4CYvTJEKa9FenXW9UOMNQU989EQ'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/json
Content-Length: 309

[ {
  "id" : 1,
  "user" : "gentar_test_user1@gentar.org",
  "date" : "2020-06-17T15:08:56.643268",
  "comment" : "PhenotypingStage updated",
  "details" : [ {
    "field" : "phenotyping_experiments_started",
    "oldValue" : "2020-02-24",
    "newValue" : "2020-04-02",
    "note" : "Field changed"
  } ]
} ]

POST /api/plans/PIN:0000000002/phenotypingStages/ HTTP/1.1
Content-Type: application/json
Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6InlsT3VyS2FDcll2dDFnOFRRSWZBLVEiLCJpYXQiOjE3MDg0NDE2NDcsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ0N30.j9D9cqHN5LxHx1VgmgMoc0fHc26z-xzhwH2PmgVEQjdSp1ooJRhrAA_drTKcMPjgZZxcPktPBzRxG4Sb4vmNTfFRv7Q5r5FdzSUCOAhh-Bxp3pWJhYPmOSGhm9U9q1YCzSq3d1bY012q569IopLXoSNF9x-mNgKLuBgyovkSEQHYVkBFnSGVn1OHnvWdH4GdC8h0iAmvJLx-IjKo1JENfBaMAteBBpmA6lxE0L_VWYh2TzYkVFBRcnehpEkxQgm58skDbEbCp0GnT0qxkGfbNOHD3mWkbXkjP-Tcz11gi83sU9UtLsIrT9H-u45pDavUoyDADRN6I115oTB3q-0pXQ
Content-Length: 377
Host: localhost:8080

{
  "phenotypingTypeName" : "early adult and embryo",
  "phenotypingExternalRef" : "JR34077",
  "phenotypingExperimentsStarted" : "2020-02-24",
  "initialDataReleaseDate" : "2015-11-23",
  "tissueDistributions" : [ {
    "startDate" : "2020-04-13",
    "endDate" : "2021-05-15",
    "workUnitName" : "TCP",
    "materialDepositedTypeName" : "Paraffin-embedded Sections"
  } ]
}

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 336

{
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000002/phenotypingStages/PSN:000000000004"
    }
  },
  "history" : [ {
    "id" : 1,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:27.869827177",
    "comment" : "PhenotypingStage created",
    "details" : [ ]
  } ]
}

PUT /api/plans/PIN:0000000001/phenotypingStages/PSN:000000000001/ HTTP/1.1
Content-Type: application/json
Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6InVGeEo2dHV5X3gyOVRDaWRXbFpLZUEiLCJpYXQiOjE3MDg0NDE2NDksInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ0OX0.RJBEOu60ydzm-ba56IWbQWJMw2YSF3uH1FvHhFyaK1GTTKun9PHrh3iYOWo000nZUW6LRsVlTzHM6zx8TwV4YvxLY759DojovXHIJcOn4mGxg9S6PJnSFFi2xDRAuZrGiPlI2SADV48Ckl_FP4h9PKkUjX0tRmB6Nu8wKcSUpvBWlbtl9NAMVHkygaWylTJhEuCS8y0uwSClJXXRPBXrN_FV8gOXXG4NUeiZ1ERv_IgmXMdiKzhpxfQ8xyGeX5bY4yHPD3-dM1mDuN3QMY8R3Y3Rkxp1voEFuYuHFsIZYebNKGqsdn390miQjHs7SWPo7TShD1SRWYYa10sCvq2_5g
Content-Length: 428
Host: localhost:8080

{
  "psn" : "PSN:000000000001",
  "phenotypingExternalRef" : "CR10129",
  "phenotypingExperimentsStarted" : "2020-04-02",
  "initialDataReleaseDate" : "2015-11-23",
  "tissueDistributions" : [ {
    "id" : 1,
    "startDate" : "2020-04-13",
    "endDate" : "2021-05-15",
    "workUnitName" : "TCP",
    "materialDepositedTypeName" : "Paraffin-embedded Sections"
  } ],
  "statusTransition" : {
    "actionToExecute" : null
  }
}

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 490

{
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/plans/PIN:0000000001/phenotypingStages/PSN:000000000001"
    }
  },
  "history" : [ {
    "id" : 1,
    "user" : "gentar_test_user1@gentar.org",
    "date" : "2024-02-20T15:07:29.519682646",
    "comment" : "PhenotypingStage updated",
    "details" : [ {
      "field" : "phenotypingExperimentsStarted",
      "oldValue" : "2020-02-24",
      "newValue" : "2020-04-02",
      "note" : "Field changed"
    } ]
  } ]
}

$ curl 'http://localhost:8080/api/targ_rep/alleles' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IlE5cXI3QjNxaXZJaUY3NWFxT3dzLVEiLCJpYXQiOjE3MDg0NDE2NTIsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1Mn0.kZrfAG98OZSYS1ksKahX5ETdvWnW7uGkQ11TytCZtUBdXgGAOS68PL8yOc6nC4iQ-pn1z4qvsftjBLKZ8EjeIDySw3amMS_2vPITDIG-l61ONzo_ghg7uibxcIjrulVk3eF5bfoLSWoA7neVzqhiEdwZ-GemcQcy0a8psnjy5GxKXUAbtFOVDkfxHTBtyqblxl5codZJD1_QkI1K7fEYqyInMYfl4On6Zbc7zkpWy5KXjFvmuCZGPytYFJYKoTTup6uhveykH-G9S2C25RBF1C-ddYnNEZWsmgVBU5qyiyf-UKBWkXLNdrNRis2FwTZp91JWLKxkYt8p3W-a8hPdWQ'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Link:
Content-Type: application/hal+json
Content-Length: 1156

{
  "_embedded" : {
    "targrep_alleles" : [ {
      "id" : 142,
      "assembly" : "GRCm38",
      "chromosome" : "5",
      "strand" : null,
      "cassette" : "L1L2_Bact_P",
      "backbone" : "L3L4_pD223_DTA_T_spec",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/targ_rep/alleles/142"
        }
      },
      "project_design_id" : 175471,
      "design_type" : {
        "name" : "Conditional Ready"
      },
      "design_subtype" : {
        "name" : "Frameshift"
      },
      "subtype_description" : "",
      "homology_arm_start" : 24427320,
      "homology_arm_end" : 24416109,
      "cassette_start" : 24421536,
      "cassette_end" : 24421446,
      "loxp_start" : 24420131,
      "loxp_end" : 24420125,
      "mgi_accession_id" : [ "MGI:4432925" ],
      "cassette_type" : "Promotor Driven",
      "floxed_start_exon" : "ENSMUSE00000183967",
      "floxed_end_exon" : "ENSMUSE00000183963"
    } ]
  },
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/targ_rep/alleles"
    }
  },
  "page" : {
    "size" : 20,
    "totalElements" : 1,
    "totalPages" : 1,
    "number" : 0
  }
}

$ curl 'http://localhost:8080/api/targ_rep/alleles/142' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IllydkRNNll2NHR2N3VoY3dzaG54R3ciLCJpYXQiOjE3MDg0NDE2NTIsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1Mn0.gUDFeGQt1Zg7XmrX4mHF8gthBaxS2lyLG1y_A-MQ0F1mSNB9wc6LbjkMET4V4Gd4xt9WctzUHQsLdHk8TuwIIKVLUaKnzNDlC17tV-ciebmFJZcnRueSX0tgDTmRKOBBkzX_cFtzDHmJQOQrlui47w6sSXzfPdDmtCfjvf6ZFjDCJNeLf453nibw5uNuS3O8_PoVe6kCjCfXk7mn8NQhw94AWY4WBTCyNYWicygdajF4wp_WFwxyoBdZig8lIWyTV2Haee0rYVQ1P4Fvorr_GlpNxkiPPGBkPxbbMvScTfGVGX8FwNhtFyJWL9lPygmDqNEZpwZXIcvKLt8Z90f_EQ'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 782

{
  "id" : 142,
  "assembly" : "GRCm38",
  "chromosome" : "5",
  "strand" : null,
  "cassette" : "L1L2_Bact_P",
  "backbone" : "L3L4_pD223_DTA_T_spec",
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/targ_rep/alleles/142"
    }
  },
  "project_design_id" : 175471,
  "design_type" : {
    "name" : "Conditional Ready"
  },
  "design_subtype" : {
    "name" : "Frameshift"
  },
  "subtype_description" : "",
  "homology_arm_start" : 24427320,
  "homology_arm_end" : 24416109,
  "cassette_start" : 24421536,
  "cassette_end" : 24421446,
  "loxp_start" : 24420131,
  "loxp_end" : 24420125,
  "mgi_accession_id" : [ "MGI:4432925" ],
  "cassette_type" : "Promotor Driven",
  "floxed_start_exon" : "ENSMUSE00000183967",
  "floxed_end_exon" : "ENSMUSE00000183963"
}

$ curl 'http://localhost:8080/api/targ_rep/es_cell' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IlFQYTJ1UjJiZEgzdDRlTUVKWG1JaFEiLCJpYXQiOjE3MDg0NDE2NTQsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1NH0.JIviYcUoJTVeVEWvMKlt-rmvaZt8ijuP4cn_0ryNf_wRJHmjHrGLalCxyRcC6ZXiUU5o1mo8Wvr3XCvY_JH0yWFynNpJ1enXOB7aDPKwU8Vb_mJRCDFQNySAy6fHj6vpfGtuSlgObbdFcaTUvCWwDMSXkCCTrlZm4KdF1GKEcvwJs25G3Dk9wXtaI85gX3NZdshU68fHZPJGcIKd3DLBztdIQ1RaRGlslxdxuk2hs4CeM9B08nQ1P2yp3dGIBnBUYlgnyaB9c1PE5j-7hBZ_f5WJn2cwQlh64ncPoO6wGbaqld_Rg0-0OPyhfrWomGoqTf9AyINnKjesWgrOymoTAg'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Link:
Content-Type: application/hal+json
Content-Length: 2730

{
  "_embedded" : {
    "targrep_es_cells" : [ {
      "id" : 14210,
      "pipelineId" : 4,
      "alleleId" : 142,
      "name" : "EPD0045_1_A11",
      "targetingVectorId" : 158,
      "parentalCellLine" : "JM8.N4",
      "ikmcProjectId" : "41713",
      "mgiAlleleId" : null,
      "alleleSymbolSuperscript" : null,
      "comment" : "",
      "contact" : null,
      "reportToPublic" : true,
      "productionQcFivePrimeScreen" : "pass",
      "productionQcLossOfAllele" : "pass",
      "productionQcLoxpScreen" : "pass",
      "productionQcThreePrimeScreen" : "not confirmed",
      "productionQcVectorIntegrity" : "pass",
      "userQcComment" : "pass",
      "userQcFivePrimeCassetteIntegrity" : "pass",
      "userQcFivePrimeLrPcr" : "pass",
      "userQcKaryotype" : "pass",
      "userQcLaczSrPcr" : "pass",
      "userQcLossOfWtAllele" : "pass",
      "userQcLoxpConfirmation" : "pass",
      "userQcMapTest" : "pass",
      "userQcMutantSpecificSrPcr" : "pass",
      "userQcNeoCountQpcr" : "pass",
      "userQcNeoSrPcr" : "pass",
      "userQcSouthernBlot" : "pass",
      "userQcThreePrimeLrPcr" : "pass",
      "userQcTvBackboneAssay" : "pass",
      "targRepDistributionQcList" : [ {
        "karyotypeHigh" : 0.4,
        "karyotypeLow" : 0.31,
        "copyNumber" : "pass",
        "fivePrimeLrPcr" : "pass",
        "fivePrimeSrPcr" : "pass",
        "thawing" : "pass",
        "threePrimeLrPcr" : null,
        "threePrimeSrPcr" : "pass",
        "loa" : "pass",
        "loxp" : "pass",
        "lacz" : "pass",
        "chr1" : "pass",
        "chr8a" : "pass",
        "chr8b" : "pass",
        "chr11a" : "pass",
        "chr11b" : "pass",
        "chry" : "pass",
        "esCellDistributionCentre" : {
          "id" : 2,
          "name" : "KOMP"
        },
        "id" : 2967
      } ],
      "targRepEsCellDistributionProductList" : [ {
        "distributionNetworkName" : "MMRRC",
        "startDate" : "2018-04-19",
        "endDate" : "2018-04-19",
        "distributionIdentifier" : "RRID:MMRRC_048962-UCDT"
      } ],
      "_links" : {
        "pipeline" : [ {
          "href" : "http://localhost:8080/api/targ_rep/pipelines/4"
        } ],
        "allele" : [ {
          "href" : "http://localhost:8080/api/targ_rep/alleles/142"
        } ],
        "targeting_vector" : [ {
          "href" : "http://localhost:8080/api/targ_rep/targeting_vectors/158"
        } ],
        "self" : {
          "href" : "http://localhost:8080/api/targ_rep/es_cell/14210"
        }
      }
    } ]
  },
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/targ_rep/es_cell"
    }
  },
  "page" : {
    "size" : 20,
    "totalElements" : 1,
    "totalPages" : 1,
    "number" : 0
  }
}

$ curl 'http://localhost:8080/api/targ_rep/es_cell/14210' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IlFvWlVkTHJBVmRCZldfRllHWl9rR2ciLCJpYXQiOjE3MDg0NDE2NTMsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1M30.OY1QJSUqYgQNcHHh-usvGRreQ3ReZ0BW43cwrHuRhngg9R4Swk79iccWR3smLe9nxF3JYj7KwD9HMklEImngM6K_67H2GsjnpYgRvtdgQxrYp5M-3clUlxUO96gQcWABmR1eTIK8HeYeF7JcTeu-URuObE_TwAtX9j9z-7UK6MD7HkP53cJKVkxNBC80IpE9RJqW22cVRFHpfP6Daa0E5idtS1ySSj-fWTq9xc0rHXV1ZNT17TgUlucTC8th95O8iiMaHBap-OcCc6tSgGFiuaQObY-DwJn8ZpRvH-ctYAGbG7_iPeUl48EZqtnOHAcEHR1EN3JWfvKESnQtLmIrtQ'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 2171

{
  "id" : 14210,
  "pipelineId" : 4,
  "alleleId" : 142,
  "name" : "EPD0045_1_A11",
  "targetingVectorId" : 158,
  "parentalCellLine" : "JM8.N4",
  "ikmcProjectId" : "41713",
  "mgiAlleleId" : null,
  "alleleSymbolSuperscript" : null,
  "comment" : "",
  "contact" : null,
  "reportToPublic" : true,
  "productionQcFivePrimeScreen" : "pass",
  "productionQcLossOfAllele" : "pass",
  "productionQcLoxpScreen" : "pass",
  "productionQcThreePrimeScreen" : "not confirmed",
  "productionQcVectorIntegrity" : "pass",
  "userQcComment" : "pass",
  "userQcFivePrimeCassetteIntegrity" : "pass",
  "userQcFivePrimeLrPcr" : "pass",
  "userQcKaryotype" : "pass",
  "userQcLaczSrPcr" : "pass",
  "userQcLossOfWtAllele" : "pass",
  "userQcLoxpConfirmation" : "pass",
  "userQcMapTest" : "pass",
  "userQcMutantSpecificSrPcr" : "pass",
  "userQcNeoCountQpcr" : "pass",
  "userQcNeoSrPcr" : "pass",
  "userQcSouthernBlot" : "pass",
  "userQcThreePrimeLrPcr" : "pass",
  "userQcTvBackboneAssay" : "pass",
  "targRepDistributionQcList" : [ {
    "karyotypeHigh" : 0.4,
    "karyotypeLow" : 0.31,
    "copyNumber" : "pass",
    "fivePrimeLrPcr" : "pass",
    "fivePrimeSrPcr" : "pass",
    "thawing" : "pass",
    "threePrimeLrPcr" : null,
    "threePrimeSrPcr" : "pass",
    "loa" : "pass",
    "loxp" : "pass",
    "lacz" : "pass",
    "chr1" : "pass",
    "chr8a" : "pass",
    "chr8b" : "pass",
    "chr11a" : "pass",
    "chr11b" : "pass",
    "chry" : "pass",
    "esCellDistributionCentre" : {
      "id" : 2,
      "name" : "KOMP"
    },
    "id" : 2967
  } ],
  "targRepEsCellDistributionProductList" : [ {
    "distributionNetworkName" : "MMRRC",
    "startDate" : "2018-04-19",
    "endDate" : "2018-04-19",
    "distributionIdentifier" : "RRID:MMRRC_048962-UCDT"
  } ],
  "_links" : {
    "pipeline" : [ {
      "href" : "http://localhost:8080/api/targ_rep/pipelines/4"
    } ],
    "allele" : [ {
      "href" : "http://localhost:8080/api/targ_rep/alleles/142"
    } ],
    "targeting_vector" : [ {
      "href" : "http://localhost:8080/api/targ_rep/targeting_vectors/158"
    } ],
    "self" : {
      "href" : "http://localhost:8080/api/targ_rep/es_cell/14210"
    }
  }
}

$ curl 'http://localhost:8080/api/targ_rep/es_cell_by_symbol/Spanxn4' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IjFVZ0t6MWtjQ2YyU2g3OVZ0UzlqcHciLCJpYXQiOjE3MDg0NDE2NTMsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1M30.bAN0JWJT-fDmfumn04evdwosf_75iTwLZuH6hn8NRHfE43zRceWcWkDnvQ8Roh2mFWwES53eYoPLI8sxHIMFk4fptsnpvpgIFsoyYwLmGxHvc_hF6ikGI_BviRRGeoGOiSK_klZyOXp3LY1-_etIixnRg8HA9A4Y04xP6uno-QDRqX0U0G1xabrqAYdfmgetBKiBpXJ0XG6Z7NhMeDYx1nRDP6U7mpgTJwYYiVgp0KJr-kQkVB6-IVUrNIN11VYuquSXwLXSVO2Na6-oN5IuiCkr-HOaemjoGJXl8exPcUhCdUt66b3mSHcvW44gxPfgsk57RQGi6J5eFKnv0-YBzw'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/json
Content-Length: 63

[ {
  "name" : "EPD0045_1_A11",
  "pipelineName" : "EUCOMM"
} ]

$ curl 'http://localhost:8080/api/targ_rep/es_cell_by_name/EPD0045_1_A11' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6Im85elpiWU1mMlNIV1I5MnFJYXBZNHciLCJpYXQiOjE3MDg0NDE2NTQsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1NH0.fBTIjwJKipzGobS6rD4iDX-LGFNK9xQObJPouwscTfMMsIBKCPti0PjCdL7eHd1IQS--_CaSxGXz68KGFFaOojDE3ATSAWTqGfmULWDNCWBi81E0J1napwbjzcTJmn5adtAsI-L4OD-6ACed-nyoksNzDxaZ20B_byyurHq3K0RV2h1Wh_w1Ng_dcTsRiyM31329C7cXHXISUJh-9VX4Fj939M5BOYzaZUuoo3sB2R4QbKJ1wmQ5f0s4MdejqH3r09jpHNE-BCe0fyuvbFtEF0OUo1OcvCtGtDawv8L60J0Nwky1OkVxHvoBHRiKeWCzJDEfQZFCovkPEjCWSNudeA'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/json
Content-Length: 59

{
  "name" : "EPD0045_1_A11",
  "pipelineName" : "EUCOMM"
}

$ curl 'http://localhost:8080/api/targ_rep/pipelines' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IkdGVUhaOVIwUnU0N1FGX1JWdld2aXciLCJpYXQiOjE3MDg0NDE2NTEsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1MX0.ZZqNXckFVjIXpPlb-Uhq_uozP6WIzS3rEgF3Ej9S_TDGcvtqIDrtfqgs9j0jCeVcXSHFnC6gU2q7xETUWo75G1jlyz5hCYSpg8LPqYl0JjrykFa95oJQ_1eH4tDlHOAIPSYFE8Xs2p7ohfaePulY-9msfBQRF7bWiHtkeKT8xkTu8VGNI6FnP775jjlVJwui7kKvJUcKkeMzUPOQUWTPhjaayMRibZdEKz2NyfesXLa7yFAT_Fq4boFb4bpiF3Pa8Ge7ToMigrnRs9J2Tasu1MBD4Rk4VKNxGNiN5yNARZuoFxNxzEJvlZmzdebLxvzwbEQviNk5LN0ueQhQ9qJ7CQ'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Link:
Content-Type: application/hal+json
Content-Length: 529

{
  "_embedded" : {
    "targrep_pipelines" : [ {
      "id" : 4,
      "name" : "EUCOMM",
      "description" : "EUCOMM consortia",
      "_links" : {
        "self" : {
          "href" : "http://localhost:8080/api/targ_rep/pipelines/4"
        }
      },
      "geneTrap" : false,
      "reportToPublic" : true
    } ]
  },
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/targ_rep/pipelines"
    }
  },
  "page" : {
    "size" : 20,
    "totalElements" : 1,
    "totalPages" : 1,
    "number" : 0
  }
}

$ curl 'http://localhost:8080/api/targ_rep/pipelines/4' -i -X GET \
    -H 'Authorization: Bearer eyJhbGciOiJSUzI1NiJ9.eyJpc3MiOiJodHRwczovL2V4cGxvcmUuYWFpLmViaS5hYy51ay9zcCIsImp0aSI6IlA3S2lhZGdmNnlLLU1EZVNIQU1VM0EiLCJpYXQiOjE3MDg0NDE2NTEsInN1YiI6InVzci0zYmM5ZTRmNi02NTJhLTRhYmYtYWQ5Mi03NzM5N2Y4YmRkM2YiLCJlbWFpbCI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuaWNrbmFtZSI6ImdlbnRhcl90ZXN0X3VzZXIxQGdlbnRhci5vcmciLCJuYW1lIjoiR2VuVGFSIFRlc3QgdXNlciAxIiwiZG9tYWlucyI6W10sImV4cCI6MTcwODQ1MjQ1MX0.ULha4O7A-v7JOrIPn0fNTNs0k7cBzS7m9B433c2oK3ddSNd7lITjjBR6gZUlS16voc76YIryMYqud3GbrSGaYOjPsTUp78N8ckkw0X-glh-FSWFV5uVuG9yxn95K_xlPWzDK3LS8T8QgB1DCBCQSJSkJLTiHdlS7qmEUQ3nfrcq1cuWpoD5LS71OVDpdUAJXSxAVXXY81fjVdazeX2YCwNFll1wdcF1S8Ru72SypV0RVCS2BBNVpWE8Xpt9mQa3x1od_M_k80g2HG0L0PYmj-3EicapMJpCV6OkoYU6nFT5nuoe6ZNe5Bf8OlcZovPid1h4ExvjWvgN0M_wxhahXJA'

HTTP/1.1 200 OK
Vary: Origin
Vary: Access-Control-Request-Method
Vary: Access-Control-Request-Headers
Content-Type: application/hal+json
Content-Length: 227

{
  "id" : 4,
  "name" : "EUCOMM",
  "description" : "EUCOMM consortia",
  "_links" : {
    "self" : {
      "href" : "http://localhost:8080/api/targ_rep/pipelines/4"
    }
  },
  "geneTrap" : false,
  "reportToPublic" : true
}